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RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Łach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J Jr, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B 2nd, Xiao Y, Xu X, Zhang D, Zok T, Westhof E. Miao Z, et al. Among authors: tandon a. RNA. 2017 May;23(5):655-672. doi: 10.1261/rna.060368.116. Epub 2017 Jan 30. RNA. 2017. PMID: 28138060 Free PMC article.
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.
Miao Z, Adamiak RW, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cheng C, Chojnowski G, Chou FC, Cordero P, Cruz JA, Ferré-D'Amaré AR, Das R, Ding F, Dokholyan NV, Dunin-Horkawicz S, Kladwang W, Krokhotin A, Lach G, Magnus M, Major F, Mann TH, Masquida B, Matelska D, Meyer M, Peselis A, Popenda M, Purzycka KJ, Serganov A, Stasiewicz J, Szachniuk M, Tandon A, Tian S, Wang J, Xiao Y, Xu X, Zhang J, Zhao P, Zok T, Westhof E. Miao Z, et al. Among authors: tandon a. RNA. 2015 Jun;21(6):1066-84. doi: 10.1261/rna.049502.114. Epub 2015 Apr 16. RNA. 2015. PMID: 25883046 Free PMC article.
Structure modeling of RNA using sparse NMR constraints.
Williams B 2nd, Zhao B, Tandon A, Ding F, Weeks KM, Zhang Q, Dokholyan NV. Williams B 2nd, et al. Among authors: tandon a. Nucleic Acids Res. 2017 Dec 15;45(22):12638-12647. doi: 10.1093/nar/gkx1058. Nucleic Acids Res. 2017. PMID: 29165648 Free PMC article.
Computational approaches to understanding protein aggregation in neurodegeneration.
Redler RL, Shirvanyants D, Dagliyan O, Ding F, Kim DN, Kota P, Proctor EA, Ramachandran S, Tandon A, Dokholyan NV. Redler RL, et al. Among authors: tandon a. J Mol Cell Biol. 2014 Apr;6(2):104-15. doi: 10.1093/jmcb/mju007. Epub 2014 Mar 11. J Mol Cell Biol. 2014. PMID: 24620031 Free PMC article. Review.
miRNA data analysis: next-gen sequencing.
Gunaratne PH, Coarfa C, Soibam B, Tandon A. Gunaratne PH, et al. Among authors: tandon a. Methods Mol Biol. 2012;822:273-88. doi: 10.1007/978-1-61779-427-8_19. Methods Mol Biol. 2012. PMID: 22144206
The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences.
Riehle K, Coarfa C, Jackson A, Ma J, Tandon A, Paithankar S, Raghuraman S, Mistretta TA, Saulnier D, Raza S, Diaz MA, Shulman R, Aagaard K, Versalovic J, Milosavljevic A. Riehle K, et al. Among authors: tandon a. BMC Bioinformatics. 2012;13 Suppl 13(Suppl 13):S11. doi: 10.1186/1471-2105-13-S13-S11. Epub 2012 Aug 24. BMC Bioinformatics. 2012. PMID: 23320832 Free PMC article.
772 results