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Page 1
Saccharomyces genome database: underlying principles and organisation.
Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry JM. Dwight SS, et al. Among authors: theesfeld cl. Brief Bioinform. 2004 Mar;5(1):9-22. doi: 10.1093/bib/5.1.9. Brief Bioinform. 2004. PMID: 15153302 Free PMC article.
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).
Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM. Balakrishnan R, et al. Among authors: theesfeld cl. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D374-7. doi: 10.1093/nar/gki023. Nucleic Acids Res. 2005. PMID: 15608219 Free PMC article.
Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.
Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM. Hirschman JE, et al. Among authors: theesfeld cl. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D442-5. doi: 10.1093/nar/gkj117. Nucleic Acids Res. 2006. PMID: 16381907 Free PMC article.
Discovery of biological networks from diverse functional genomic data.
Myers CL, Robson D, Wible A, Hibbs MA, Chiriac C, Theesfeld CL, Dolinski K, Troyanskaya OG. Myers CL, et al. Among authors: theesfeld cl. Genome Biol. 2005;6(13):R114. doi: 10.1186/gb-2005-6-13-r114. Epub 2005 Dec 19. Genome Biol. 2005. PMID: 16420673 Free PMC article.
Expanded protein information at SGD: new pages and proteome browser.
Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM. Nash R, et al. Among authors: theesfeld cl. Nucleic Acids Res. 2007 Jan;35(Database issue):D468-71. doi: 10.1093/nar/gkl931. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142221 Free PMC article.
The BioGRID interaction database: 2015 update.
Chatr-Aryamontri A, Breitkreutz BJ, Oughtred R, Boucher L, Heinicke S, Chen D, Stark C, Breitkreutz A, Kolas N, O'Donnell L, Reguly T, Nixon J, Ramage L, Winter A, Sellam A, Chang C, Hirschman J, Theesfeld C, Rust J, Livstone MS, Dolinski K, Tyers M. Chatr-Aryamontri A, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D470-8. doi: 10.1093/nar/gku1204. Epub 2014 Nov 26. Nucleic Acids Res. 2015. PMID: 25428363 Free PMC article.
Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.
Oughtred R, Chatr-aryamontri A, Breitkreutz BJ, Chang CS, Rust JM, Theesfeld CL, Heinicke S, Breitkreutz A, Chen D, Hirschman J, Kolas N, Livstone MS, Nixon J, O'Donnell L, Ramage L, Winter A, Reguly T, Sellam A, Stark C, Boucher L, Dolinski K, Tyers M. Oughtred R, et al. Among authors: theesfeld cl. Cold Spring Harb Protoc. 2016 Jan 4;2016(1):pdb.prot088880. doi: 10.1101/pdb.prot088880. Cold Spring Harb Protoc. 2016. PMID: 26729909 Free PMC article.
BioGRID: A Resource for Studying Biological Interactions in Yeast.
Oughtred R, Chatr-aryamontri A, Breitkreutz BJ, Chang CS, Rust JM, Theesfeld CL, Heinicke S, Breitkreutz A, Chen D, Hirschman J, Kolas N, Livstone MS, Nixon J, O'Donnell L, Ramage L, Winter A, Reguly T, Sellam A, Stark C, Boucher L, Dolinski K, Tyers M. Oughtred R, et al. Among authors: theesfeld cl. Cold Spring Harb Protoc. 2016 Jan 4;2016(1):pdb.top080754. doi: 10.1101/pdb.top080754. Cold Spring Harb Protoc. 2016. PMID: 26729913 Free PMC article.
An extended set of yeast-based functional assays accurately identifies human disease mutations.
Sun S, Yang F, Tan G, Costanzo M, Oughtred R, Hirschman J, Theesfeld CL, Bansal P, Sahni N, Yi S, Yu A, Tyagi T, Tie C, Hill DE, Vidal M, Andrews BJ, Boone C, Dolinski K, Roth FP. Sun S, et al. Among authors: theesfeld cl. Genome Res. 2016 May;26(5):670-80. doi: 10.1101/gr.192526.115. Epub 2016 Mar 14. Genome Res. 2016. PMID: 26975778 Free PMC article.
41 results