Thompson EJ - Search Results

1

Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq.

Khoury JD, Tannir NM, Williams MD, Chen Y, Yao H, Zhang J, Thompson EJ; TCGA Network; Meric-Bernstam F, Medeiros LJ, Weinstein JN, Su X. Khoury JD, et al. Among authors: thompson ej. J Virol. 2013 Aug;87(16):8916-26. doi: 10.1128/JVI.00340-13. Epub 2013 Jun 5. J Virol. 2013. PMID: 23740984 Free PMC article.

2

VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.

Chen Y, Yao H, Thompson EJ, Tannir NM, Weinstein JN, Su X. Chen Y, et al. Among authors: thompson ej. Bioinformatics. 2013 Jan 15;29(2):266-7. doi: 10.1093/bioinformatics/bts665. Epub 2012 Nov 17. Bioinformatics. 2013. PMID: 23162058 Free PMC article.

3

Next-generation sequencing of translocation renal cell carcinoma reveals novel RNA splicing partners and frequent mutations of chromatin-remodeling genes.

Malouf GG, Su X, Yao H, Gao J, Xiong L, He Q, Compérat E, Couturier J, Molinié V, Escudier B, Camparo P, Doss DJ, Thompson EJ, Khayat D, Wood CG, Yu W, Teh BT, Weinstein J, Tannir NM. Malouf GG, et al. Among authors: thompson ej. Clin Cancer Res. 2014 Aug 1;20(15):4129-40. doi: 10.1158/1078-0432.CCR-13-3036. Epub 2014 Jun 4. Clin Cancer Res. 2014. PMID: 24899691 Free PMC article.

4

Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing.

Malouf GG, Zhang J, Yuan Y, Compérat E, Rouprêt M, Cussenot O, Chen Y, Thompson EJ, Tannir NM, Weinstein JN, Valero V, Khayat D, Spano JP, Su X. Malouf GG, et al. Among authors: thompson ej. Mol Oncol. 2015 Jan;9(1):32-43. doi: 10.1016/j.molonc.2014.07.007. Epub 2014 Jul 25. Mol Oncol. 2015. PMID: 25126716 Free PMC article.

5

Long non-coding RNA profiling links subgroup classification of endometrioid endometrial carcinomas with trithorax and polycomb complex aberrations.

Jiang Y, Malouf GG, Zhang J, Zheng X, Chen Y, Thompson EJ, Weinstein JN, Yuan Y, Spano JP, Broaddus R, Tannir NM, Khayat D, Lu KH, Su X. Jiang Y, et al. Among authors: thompson ej. Oncotarget. 2015 Nov 24;6(37):39865-76. doi: 10.18632/oncotarget.5399. Oncotarget. 2015. PMID: 26431491 Free PMC article.

6

NSD1 Inactivation and SETD2 Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas.

Su X, Zhang J, Mouawad R, Compérat E, Rouprêt M, Allanic F, Parra J, Bitker MO, Thompson EJ, Gowrishankar B, Houldsworth J, Weinstein JN, Tost J, Broom BM, Khayat D, Spano JP, Tannir NM, Malouf GG. Su X, et al. Among authors: thompson ej. Cancer Res. 2017 Sep 15;77(18):4835-4845. doi: 10.1158/0008-5472.CAN-17-0143. Epub 2017 Jul 28. Cancer Res. 2017. PMID: 28754676 Free PMC article.

7

Incidence, clinicopathological features and fusion transcript landscape of translocation renal cell carcinomas.

Classe M, Malouf GG, Su X, Yao H, Thompson EJ, Doss DJ, Grégoire V, Lenobin J, Fantoni JC, Sudour-Bonnange H, Khayat D, Aubert S, Tannir NM, Leroy X. Classe M, et al. Among authors: thompson ej. Histopathology. 2017 Jun;70(7):1089-1097. doi: 10.1111/his.13167. Epub 2017 Mar 21. Histopathology. 2017. PMID: 28106924

8

Dual-site phosphorylation of the control of virulence regulator impacts group a streptococcal global gene expression and pathogenesis.

Horstmann N, Saldaña M, Sahasrabhojane P, Yao H, Su X, Thompson E, Koller A, Shelburne SA 3rd. Horstmann N, et al. PLoS Pathog. 2014 May 1;10(5):e1004088. doi: 10.1371/journal.ppat.1004088. eCollection 2014 May. PLoS Pathog. 2014. PMID: 24788524 Free PMC article.

9

Characterization of the effect of the histidine kinase CovS on response regulator phosphorylation in group A Streptococcus.

Horstmann N, Sahasrabhojane P, Saldaña M, Ajami NJ, Flores AR, Sumby P, Liu CG, Yao H, Su X, Thompson E, Shelburne SA. Horstmann N, et al. Infect Immun. 2015 Mar;83(3):1068-77. doi: 10.1128/IAI.02659-14. Epub 2015 Jan 5. Infect Immun. 2015. PMID: 25561708 Free PMC article.

10

Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates.

Chitsazzadeh V, Coarfa C, Drummond JA, Nguyen T, Joseph A, Chilukuri S, Charpiot E, Adelmann CH, Ching G, Nguyen TN, Nicholas C, Thomas VD, Migden M, MacFarlane D, Thompson E, Shen J, Takata Y, McNiece K, Polansky MA, Abbas HA, Rajapakshe K, Gower A, Spira A, Covington KR, Xiao W, Gunaratne P, Pickering C, Frederick M, Myers JN, Shen L, Yao H, Su X, Rapini RP, Wheeler DA, Hawk ET, Flores ER, Tsai KY. Chitsazzadeh V, et al. Nat Commun. 2016 Aug 30;7:12601. doi: 10.1038/ncomms12601. Nat Commun. 2016. PMID: 27574101 Free PMC article.

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