Thompson MJ - Search Results

1

A mammalian methylation array for profiling methylation levels at conserved sequences.

Arneson A, Haghani A, Thompson MJ, Pellegrini M, Kwon SB, Vu H, Maciejewski E, Yao M, Li CZ, Lu AT, Morselli M, Rubbi L, Barnes B, Hansen KD, Zhou W, Breeze CE, Ernst J, Horvath S. Arneson A, et al. Among authors: thompson mj. Nat Commun. 2022 Feb 10;13(1):783. doi: 10.1038/s41467-022-28355-z. Nat Commun. 2022. PMID: 35145108 Free PMC article.

2

Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.

Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Pellegrini M, et al. Among authors: thompson mj. Proc Natl Acad Sci U S A. 1999 Apr 13;96(8):4285-8. doi: 10.1073/pnas.96.8.4285. Proc Natl Acad Sci U S A. 1999. PMID: 10200254 Free PMC article.

3

A combined algorithm for genome-wide prediction of protein function.

Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. Marcotte EM, et al. Among authors: thompson mj. Nature. 1999 Nov 4;402(6757):83-6. doi: 10.1038/47048. Nature. 1999. PMID: 10573421

4

Computational method to assign microbial genes to pathways.

Pellegrini M, Thompson M, Fierro J, Bowers P. Pellegrini M, et al. J Cell Biochem Suppl. 2001;Suppl 37:106-9. doi: 10.1002/jcb.10071. J Cell Biochem Suppl. 2001. PMID: 11842435 Review.

5

Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach.

Strong M, Mallick P, Pellegrini M, Thompson MJ, Eisenberg D. Strong M, et al. Among authors: thompson mj. Genome Biol. 2003;4(9):R59. doi: 10.1186/gb-2003-4-9-r59. Epub 2003 Aug 29. Genome Biol. 2003. PMID: 12952538 Free PMC article.

6

Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps.

Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. Strong M, et al. Among authors: thompson mj. Nucleic Acids Res. 2003 Dec 15;31(24):7099-109. doi: 10.1093/nar/gkg924. Nucleic Acids Res. 2003. PMID: 14654685 Free PMC article.

7

Prolinks: a database of protein functional linkages derived from coevolution.

Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D. Bowers PM, et al. Among authors: thompson mj. Genome Biol. 2004;5(5):R35. doi: 10.1186/gb-2004-5-5-r35. Epub 2004 Apr 16. Genome Biol. 2004. PMID: 15128449 Free PMC article.

8

Pancreatic cancer patient survival correlates with DNA methylation of pancreas development genes.

Thompson MJ, Rubbi L, Dawson DW, Donahue TR, Pellegrini M. Thompson MJ, et al. PLoS One. 2015 Jun 3;10(6):e0128814. doi: 10.1371/journal.pone.0128814. eCollection 2015. PLoS One. 2015. PMID: 26039411 Free PMC article.

9

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves.

Janowitz Koch I, Clark MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, McCoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM. Janowitz Koch I, et al. Among authors: thompson mj. Mol Ecol. 2016 Apr;25(8):1838-55. doi: 10.1111/mec.13480. Epub 2016 Jan 18. Mol Ecol. 2016. PMID: 27112634 Free PMC article.

10

Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma.

Flinders C, Lam L, Rubbi L, Ferrari R, Fitz-Gibbon S, Chen PY, Thompson M, Christofk H, B Agus D, Ruderman D, Mallick P, Pellegrini M. Flinders C, et al. Genome Med. 2016 May 4;8(1):54. doi: 10.1186/s13073-016-0305-0. Genome Med. 2016. PMID: 27146673 Free PMC article.

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