Tomlin CJ - Search Results

1

Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay.

Lee ME, Aswani A, Han AS, Tomlin CJ, Dueber JE. Lee ME, et al. Among authors: tomlin cj. Nucleic Acids Res. 2013 Dec;41(22):10668-78. doi: 10.1093/nar/gkt809. Epub 2013 Sep 12. Nucleic Acids Res. 2013. PMID: 24038353 Free PMC article.

2

Nonparametric variable selection and modeling for spatial and temporal regulatory networks.

Aswani A, Biggin MD, Bickel P, Tomlin C. Aswani A, et al. Methods Cell Biol. 2012;110:243-61. doi: 10.1016/B978-0-12-388403-9.00010-2. Methods Cell Biol. 2012. PMID: 22482952

3

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data.

Aswani A, Keränen SV, Brown J, Fowlkes CC, Knowles DW, Biggin MD, Bickel P, Tomlin CJ. Aswani A, et al. Among authors: tomlin cj. BMC Bioinformatics. 2010 Aug 4;11:413. doi: 10.1186/1471-2105-11-413. BMC Bioinformatics. 2010. PMID: 20684787 Free PMC article.

4

Modeling differentiation-state transitions linked to therapeutic escape in triple-negative breast cancer.

Chapman MP, Risom T, Aswani AJ, Langer EM, Sears RC, Tomlin CJ. Chapman MP, et al. Among authors: tomlin cj. PLoS Comput Biol. 2019 Mar 11;15(3):e1006840. doi: 10.1371/journal.pcbi.1006840. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30856168 Free PMC article.

5

Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer.

Risom T, Langer EM, Chapman MP, Rantala J, Fields AJ, Boniface C, Alvarez MJ, Kendsersky ND, Pelz CR, Johnson-Camacho K, Dobrolecki LE, Chin K, Aswani AJ, Wang NJ, Califano A, Lewis MT, Tomlin CJ, Spellman PT, Adey A, Gray JW, Sears RC. Risom T, et al. Among authors: tomlin cj. Nat Commun. 2018 Sep 19;9(1):3815. doi: 10.1038/s41467-018-05729-w. Nat Commun. 2018. PMID: 30232459 Free PMC article.

6

Correction: Modeling differentiation-state transitions linked to therapeutic escape in triple-negative breast cancer.

Chapman MP, Risom T, Aswani AJ, Langer EM, Sears RC, Tomlin CJ. Chapman MP, et al. Among authors: tomlin cj. PLoS Comput Biol. 2019 Oct 9;15(10):e1007441. doi: 10.1371/journal.pcbi.1007441. eCollection 2019 Oct. PLoS Comput Biol. 2019. PMID: 31596847 Free PMC article.

7

Reconstruction of Gene Regulatory Networks based on Repairing Sparse Low-rank Matrices.

Chang YH, Dobbe R, Bhushan P, Gray JW, Tomlin CJ. Chang YH, et al. Among authors: tomlin cj. IEEE/ACM Trans Comput Biol Bioinform. 2016 Jul-Aug;13(4):767-777. doi: 10.1109/TCBB.2015.2465952. Epub 2015 Aug 7. IEEE/ACM Trans Comput Biol Bioinform. 2016. PMID: 27990101 Free PMC article.

8

Disentangling multidimensional spatio-temporal data into their common and aberrant responses.

Chang YH, Korkola J, Amin DN, Moasser MM, Carmena JM, Gray JW, Tomlin CJ. Chang YH, et al. Among authors: tomlin cj. PLoS One. 2015 Apr 22;10(4):e0121607. doi: 10.1371/journal.pone.0121607. eCollection 2015. PLoS One. 2015. PMID: 25901353 Free PMC article.

9

Optimization-based inference for temporally evolving networks with applications in biology.

Chang YH, Gray J, Tomlin C. Chang YH, et al. J Comput Biol. 2012 Dec;19(12):1307-23. doi: 10.1089/cmb.2012.0190. J Comput Biol. 2012. PMID: 23210478 Free PMC article.

10

Exact reconstruction of gene regulatory networks using compressive sensing.

Chang YH, Gray JW, Tomlin CJ. Chang YH, et al. Among authors: tomlin cj. BMC Bioinformatics. 2014 Dec 14;15(1):400. doi: 10.1186/s12859-014-0400-4. BMC Bioinformatics. 2014. PMID: 25495633 Free PMC article.

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