U01 CA235488/CA/NCI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2019	1
2020	3
2021	7
2022	2
2023	1
2024	0

1

TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes.

Carpenter CM, Gillenwater L, Bowler R, Kechris K, Ghosh D. Carpenter CM, et al. BMC Bioinformatics. 2023 Oct 25;24(1):398. doi: 10.1186/s12859-023-05459-x. BMC Bioinformatics. 2023. PMID: 37880571 Free PMC article.

2

Mechanism-aware imputation: a two-step approach in handling missing values in metabolomics.

Dekermanjian JP, Shaddox E, Nandy D, Ghosh D, Kechris K. Dekermanjian JP, et al. BMC Bioinformatics. 2022 May 16;23(1):179. doi: 10.1186/s12859-022-04659-1. BMC Bioinformatics. 2022. PMID: 35578165 Free PMC article.

3

Profiling Parkinson's disease cognitive phenotypes via resting-state magnetoencephalography.

Simon OB, Rojas DC, Ghosh D, Yang X, Rogers SE, Martin CS, Holden SK, Kluger BM, Buard I. Simon OB, et al. J Neurophysiol. 2022 Jan 1;127(1):279-289. doi: 10.1152/jn.00316.2021. Epub 2021 Dec 22. J Neurophysiol. 2022. PMID: 34936515 Free PMC article.

4

PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes.

Carpenter CM, Zhang W, Gillenwater L, Severn C, Ghosh T, Bowler R, Kechris K, Ghosh D. Carpenter CM, et al. PLoS Comput Biol. 2021 Oct 22;17(10):e1008986. doi: 10.1371/journal.pcbi.1008986. eCollection 2021 Oct. PLoS Comput Biol. 2021. PMID: 34679079 Free PMC article.

5

MSCAT: A Machine Learning Assisted Catalog of Metabolomics Software Tools.

Dekermanjian J, Labeikovsky W, Ghosh D, Kechris K. Dekermanjian J, et al. Metabolites. 2021 Oct 2;11(10):678. doi: 10.3390/metabo11100678. Metabolites. 2021. PMID: 34677393 Free PMC article.

6

Reproducibility of mass spectrometry based metabolomics data.

Ghosh T, Philtron D, Zhang W, Kechris K, Ghosh D. Ghosh T, et al. BMC Bioinformatics. 2021 Sep 7;22(1):423. doi: 10.1186/s12859-021-04336-9. BMC Bioinformatics. 2021. PMID: 34493210 Free PMC article.

7

A Mediation Approach to Discovering Causal Relationships between the Metabolome and DNA Methylation in Type 1 Diabetes.

Vigers T, Vanderlinden LA, Johnson RK, Carry PM, Yang I, DeFelice BC, Kaizer AM, Pyle L, Rewers M, Fiehn O, Norris JM, Kechris K. Vigers T, et al. Metabolites. 2021 Aug 14;11(8):542. doi: 10.3390/metabo11080542. Metabolites. 2021. PMID: 34436483 Free PMC article.

8

Plasma Metabolomic Signatures of Chronic Obstructive Pulmonary Disease and the Impact of Genetic Variants on Phenotype-Driven Modules.

Gillenwater LA, Pratte KA, Hobbs BD, Cho MH, Zhuang Y, Halper-Stromberg E, Cruickshank-Quinn C, Reisdorph N, Petrache I, Labaki WW, O'Neal WK, Ortega VE, Jones DP, Uppal K, Jacobson S, Michelotti G, Wendt CH, Kechris KJ, Bowler RP. Gillenwater LA, et al. Netw Syst Med. 2020 Dec 1;3(1):159-181. doi: 10.1089/nsm.2020.0009. Epub 2020 Dec 31. Netw Syst Med. 2020. PMID: 33987620 Free PMC article.

9

Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and Emphysema.

Gillenwater LA, Kechris KJ, Pratte KA, Reisdorph N, Petrache I, Labaki WW, O'Neal W, Krishnan JA, Ortega VE, DeMeo DL, Bowler RP. Gillenwater LA, et al. Metabolites. 2021 Mar 11;11(3):161. doi: 10.3390/metabo11030161. Metabolites. 2021. PMID: 33799786 Free PMC article.

10

A Practical Guide to Metabolomics Software Development.

Chang HY, Colby SM, Du X, Gomez JD, Helf MJ, Kechris K, Kirkpatrick CR, Li S, Patti GJ, Renslow RS, Subramaniam S, Verma M, Xia J, Young JD. Chang HY, et al. Anal Chem. 2021 Feb 2;93(4):1912-1923. doi: 10.1021/acs.analchem.0c03581. Epub 2021 Jan 19. Anal Chem. 2021. PMID: 33467846 Free PMC article.

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