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Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription.
Genome Res. 2011 Mar;21(3):377-89. doi: 10.1101/gr.111328.110. Epub 2010 Dec 20.
Genome Res. 2011.
PMID: 21173031
Free PMC article.
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins.
Mesner LD, Valsakumar V, Cieslik M, Pickin R, Hamlin JL, Bekiranov S.
Mesner LD, et al. Among authors: valsakumar v.
Genome Res. 2013 Nov;23(11):1774-88. doi: 10.1101/gr.155218.113. Epub 2013 Jul 16.
Genome Res. 2013.
PMID: 23861383
Free PMC article.
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Thiamine biosynthesis in Saccharomyces cerevisiae is regulated by the NAD+-dependent histone deacetylase Hst1.
Li M, Petteys BJ, McClure JM, Valsakumar V, Bekiranov S, Frank EL, Smith JS.
Li M, et al. Among authors: valsakumar v.
Mol Cell Biol. 2010 Jul;30(13):3329-41. doi: 10.1128/MCB.01590-09. Epub 2010 May 3.
Mol Cell Biol. 2010.
PMID: 20439498
Free PMC article.
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Genome-wide analysis of functional sirtuin chromatin targets in yeast.
Li M, Valsakumar V, Poorey K, Bekiranov S, Smith JS.
Li M, et al. Among authors: valsakumar v.
Genome Biol. 2013 May 27;14(5):R48. doi: 10.1186/gb-2013-14-5-r48.
Genome Biol. 2013.
PMID: 23710766
Free PMC article.
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Functional genomic analysis reveals overlapping and distinct features of chronologically long-lived yeast populations.
Wierman MB, Matecic M, Valsakumar V, Li M, Smith DL Jr, Bekiranov S, Smith JS.
Wierman MB, et al. Among authors: valsakumar v.
Aging (Albany NY). 2015 Mar;7(3):177-94. doi: 10.18632/aging.100729.
Aging (Albany NY). 2015.
PMID: 25769345
Free PMC article.
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