Vera Alvarez R - Search Results

1

COG database update: focus on microbial diversity, model organisms, and widespread pathogens.

Galperin MY, Wolf YI, Makarova KS, Vera Alvarez R, Landsman D, Koonin EV. Galperin MY, et al. Among authors: vera alvarez r. Nucleic Acids Res. 2021 Jan 8;49(D1):D274-D281. doi: 10.1093/nar/gkaa1018. Nucleic Acids Res. 2021. PMID: 33167031 Free PMC article.

2

Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes.

Galperin MY, Yutin N, Wolf YI, Vera Alvarez R, Koonin EV. Galperin MY, et al. Among authors: vera alvarez r. J Bacteriol. 2022 Jun 21;204(6):e0007922. doi: 10.1128/jb.00079-22. Epub 2022 May 31. J Bacteriol. 2022. PMID: 35638784 Free PMC article.

3

Non-essential ribosomal proteins in bacteria and archaea identified using COGs.

Galperin MY, Wolf YI, Garushyants SK, Vera Alvarez R, Koonin EV. Galperin MY, et al. Among authors: vera alvarez r. J Bacteriol. 2021 Jun 1;203(11):e00058-21. doi: 10.1128/JB.00058-21. Epub 2021 Mar 22. J Bacteriol. 2021. PMID: 33753464 Free PMC article.

4

Workflow and web application for annotating NCBI BioProject transcriptome data.

Vera Alvarez R, Medeiros Vidal N, Garzón-Martínez GA, Barrero LS, Landsman D, Mariño-Ramírez L. Vera Alvarez R, et al. Database (Oxford). 2017 Jan 1;2017:bax008. doi: 10.1093/database/bax008. Database (Oxford). 2017. PMID: 28605765 Free PMC article.

5

TPMCalculator: one-step software to quantify mRNA abundance of genomic features.

Vera Alvarez R, Pongor LS, Mariño-Ramírez L, Landsman D. Vera Alvarez R, et al. Bioinformatics. 2019 Jun 1;35(11):1960-1962. doi: 10.1093/bioinformatics/bty896. Bioinformatics. 2019. PMID: 30379987 Free PMC article.

6

Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006.

Gamez RM, Rodríguez F, Vidal NM, Ramirez S, Vera Alvarez R, Landsman D, Mariño-Ramírez L. Gamez RM, et al. Among authors: vera alvarez r. BMC Genomics. 2019 May 14;20(1):378. doi: 10.1186/s12864-019-5763-5. BMC Genomics. 2019. PMID: 31088352 Free PMC article.

7

PM4NGS, a project management framework for next-generation sequencing data analysis.

Vera Alvarez R, Pongor L, Mariño-Ramírez L, Landsman D. Vera Alvarez R, et al. Gigascience. 2021 Jan 7;10(1):giaa141. doi: 10.1093/gigascience/giaa141. Gigascience. 2021. PMID: 33410471 Free PMC article.

8

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks.

Pongor LS, Gross JM, Vera Alvarez R, Murai J, Jang SM, Zhang H, Redon C, Fu H, Huang SY, Thakur B, Baris A, Marino-Ramirez L, Landsman D, Aladjem MI, Pommier Y. Pongor LS, et al. Among authors: vera alvarez r. Epigenetics Chromatin. 2020 Apr 22;13(1):21. doi: 10.1186/s13072-020-00343-x. Epigenetics Chromatin. 2020. PMID: 32321568 Free PMC article.

9

LitSense: making sense of biomedical literature at sentence level.

Allot A, Chen Q, Kim S, Vera Alvarez R, Comeau DC, Wilbur WJ, Lu Z. Allot A, et al. Among authors: vera alvarez r. Nucleic Acids Res. 2019 Jul 2;47(W1):W594-W599. doi: 10.1093/nar/gkz289. Nucleic Acids Res. 2019. PMID: 31020319 Free PMC article.

10

Census of solo LuxR genes in prokaryotic genomes.

Hudaiberdiev S, Choudhary KS, Vera Alvarez R, Gelencsér Z, Ligeti B, Lamba D, Pongor S. Hudaiberdiev S, et al. Among authors: vera alvarez r. Front Cell Infect Microbiol. 2015 Mar 12;5:20. doi: 10.3389/fcimb.2015.00020. eCollection 2015. Front Cell Infect Microbiol. 2015. PMID: 25815274 Free PMC article.

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