Vriend G - Search Results

1

The use of in vitro peptide binding profiles and in silico ligand-receptor interaction profiles to describe ligand-induced conformations of the retinoid X receptor alpha ligand-binding domain.

Folkertsma S, van Noort PI, de Heer A, Carati P, Brandt R, Visser A, Vriend G, de Vlieg J. Folkertsma S, et al. Among authors: vriend g. Mol Endocrinol. 2007 Jan;21(1):30-48. doi: 10.1210/me.2006-0072. Epub 2006 Oct 12. Mol Endocrinol. 2007. PMID: 17038419

2

A family-based approach reveals the function of residues in the nuclear receptor ligand-binding domain.

Folkertsma S, van Noort P, Van Durme J, Joosten HJ, Bettler E, Fleuren W, Oliveira L, Horn F, de Vlieg J, Vriend G. Folkertsma S, et al. Among authors: vriend g. J Mol Biol. 2004 Aug 6;341(2):321-35. doi: 10.1016/j.jmb.2004.05.075. J Mol Biol. 2004. PMID: 15276826 Review.

3

The nuclear receptor ligand-binding domain: a family-based structure analysis.

Folkertsma S, van Noort PI, Brandt RF, Bettler E, Vriend G, de Vlieg J. Folkertsma S, et al. Among authors: vriend g. Curr Med Chem. 2005;12(9):1001-16. doi: 10.2174/0929867053764699. Curr Med Chem. 2005. PMID: 15892635

4

Prediction of protein conformational freedom from distance constraints.

de Groot BL, van Aalten DM, Scheek RM, Amadei A, Vriend G, Berendsen HJ. de Groot BL, et al. Among authors: vriend g. Proteins. 1997 Oct;29(2):240-51. doi: 10.1002/(sici)1097-0134(199710)29:2<240::aid-prot11>3.0.co;2-o. Proteins. 1997. PMID: 9329088

5

AsteriX: a Web server to automatically extract ligand coordinates from figures in PDF articles.

Lounnas V, Vriend G. Lounnas V, et al. Among authors: vriend g. J Chem Inf Model. 2012 Feb 27;52(2):568-76. doi: 10.1021/ci2004303. Epub 2012 Feb 16. J Chem Inf Model. 2012. PMID: 22299625

6

Generic GPCR residue numbers - aligning topology maps while minding the gaps.

Isberg V, de Graaf C, Bortolato A, Cherezov V, Katritch V, Marshall FH, Mordalski S, Pin JP, Stevens RC, Vriend G, Gloriam DE. Isberg V, et al. Among authors: vriend g. Trends Pharmacol Sci. 2015 Jan;36(1):22-31. doi: 10.1016/j.tips.2014.11.001. Epub 2014 Dec 22. Trends Pharmacol Sci. 2015. PMID: 25541108 Free PMC article. Review.

7

Potential ligand-binding residues in rat olfactory receptors identified by correlated mutation analysis.

Singer MS, Oliveira L, Vriend G, Shepherd GM. Singer MS, et al. Among authors: vriend g. Recept Channels. 1995;3(2):89-95. Recept Channels. 1995. PMID: 8581404

8

Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism.

de Groot BL, Vriend G, Berendsen HJ. de Groot BL, et al. Among authors: vriend g. J Mol Biol. 1999 Mar 5;286(4):1241-9. doi: 10.1006/jmbi.1998.2568. J Mol Biol. 1999. PMID: 10047494

9

Modeling GPCRs.

Paiva AC, Oliveira L, Horn F, Bywater RP, Vriend G. Paiva AC, et al. Among authors: vriend g. Ernst Schering Found Symp Proc. 2006;(2):23-47. doi: 10.1007/2789_2006_002. Ernst Schering Found Symp Proc. 2006. PMID: 17703576 Review.

10

The interaction of class B G protein-coupled receptors with their hormones.

Horn F, Bywater R, Krause G, Kuipers W, Oliveira L, Paiva AC, Sander C, Vriend G. Horn F, et al. Among authors: vriend g. Recept Channels. 1998;5(5):305-14. Recept Channels. 1998. PMID: 9666522

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