Wassenaar TA - Search Results

1

Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4.

Pluhackova K, Gahbauer S, Kranz F, Wassenaar TA, Böckmann RA. Pluhackova K, et al. Among authors: wassenaar ta. PLoS Comput Biol. 2016 Nov 3;12(11):e1005169. doi: 10.1371/journal.pcbi.1005169. eCollection 2016 Nov. PLoS Comput Biol. 2016. PMID: 27812115 Free PMC article.

2

Molecular dynamics simulations of membrane proteins.

Pluhackova K, Wassenaar TA, Böckmann RA. Pluhackova K, et al. Among authors: wassenaar ta. Methods Mol Biol. 2013;1033:85-101. doi: 10.1007/978-1-62703-487-6_6. Methods Mol Biol. 2013. PMID: 23996172

3

Spontaneous adsorption of coiled-coil model peptides K and E to a mixed lipid bilayer.

Pluhackova K, Wassenaar TA, Kirsch S, Böckmann RA. Pluhackova K, et al. Among authors: wassenaar ta. J Phys Chem B. 2015 Mar 26;119(12):4396-408. doi: 10.1021/acs.jpcb.5b00434. Epub 2015 Mar 12. J Phys Chem B. 2015. PMID: 25719673

4

Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness.

Cybulski LE, Ballering J, Moussatova A, Inda ME, Vazquez DB, Wassenaar TA, de Mendoza D, Tieleman DP, Killian JA. Cybulski LE, et al. Among authors: wassenaar ta. Proc Natl Acad Sci U S A. 2015 May 19;112(20):6353-8. doi: 10.1073/pnas.1422446112. Epub 2015 May 4. Proc Natl Acad Sci U S A. 2015. PMID: 25941408 Free PMC article.

5

Synaptobrevin Transmembrane Domain Dimerization Studied by Multiscale Molecular Dynamics Simulations.

Han J, Pluhackova K, Wassenaar TA, Böckmann RA. Han J, et al. Among authors: wassenaar ta. Biophys J. 2015 Aug 18;109(4):760-71. doi: 10.1016/j.bpj.2015.06.049. Biophys J. 2015. PMID: 26287628 Free PMC article.

6

Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations.

Wassenaar TA, Ingólfsson HI, Böckmann RA, Tieleman DP, Marrink SJ. Wassenaar TA, et al. J Chem Theory Comput. 2015 May 12;11(5):2144-55. doi: 10.1021/acs.jctc.5b00209. Epub 2015 Apr 24. J Chem Theory Comput. 2015. PMID: 26574417

7

High-Throughput Simulations of Dimer and Trimer Assembly of Membrane Proteins. The DAFT Approach.

Wassenaar TA, Pluhackova K, Moussatova A, Sengupta D, Marrink SJ, Tieleman DP, Böckmann RA. Wassenaar TA, et al. J Chem Theory Comput. 2015 May 12;11(5):2278-91. doi: 10.1021/ct5010092. Epub 2015 Mar 26. J Chem Theory Comput. 2015. PMID: 26574426

8

Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models.

Wassenaar TA, Pluhackova K, Böckmann RA, Marrink SJ, Tieleman DP. Wassenaar TA, et al. J Chem Theory Comput. 2014 Feb 11;10(2):676-90. doi: 10.1021/ct400617g. Epub 2014 Jan 21. J Chem Theory Comput. 2014. PMID: 26580045

9

Dopamine transporter oligomerization involves the scaffold domain, but spares the bundle domain.

Jayaraman K, Morley AN, Szöllősi D, Wassenaar TA, Sitte HH, Stockner T. Jayaraman K, et al. Among authors: wassenaar ta. PLoS Comput Biol. 2018 Jun 6;14(6):e1006229. doi: 10.1371/journal.pcbi.1006229. eCollection 2018 Jun. PLoS Comput Biol. 2018. PMID: 29874235 Free PMC article.

10

The effect of box shape on the dynamic properties of proteins simulated under periodic boundary conditions.

Wassenaar TA, Mark AE. Wassenaar TA, et al. J Comput Chem. 2006 Feb;27(3):316-25. doi: 10.1002/jcc.20341. J Comput Chem. 2006. PMID: 16358324

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