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Fast embedding methods for clustering tens of thousands of sequences.
Blackshields G, Larkin M, Wallace IM, Wilm A, Higgins DG. Blackshields G, et al. Among authors: wilm a. Comput Biol Chem. 2008 Aug;32(4):282-6. doi: 10.1016/j.compbiolchem.2008.03.005. Epub 2008 Mar 26. Comput Biol Chem. 2008. PMID: 18450519
Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Larkin MA, et al. Among authors: wilm a. Bioinformatics. 2007 Nov 1;23(21):2947-8. doi: 10.1093/bioinformatics/btm404. Epub 2007 Sep 10. Bioinformatics. 2007. PMID: 17846036
R-Coffee: a web server for accurately aligning noncoding RNA sequences.
Moretti S, Wilm A, Higgins DG, Xenarios I, Notredame C. Moretti S, et al. Among authors: wilm a. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W10-3. doi: 10.1093/nar/gkn278. Epub 2008 May 15. Nucleic Acids Res. 2008. PMID: 18483080 Free PMC article.
BlastR--fast and accurate database searches for non-coding RNAs.
Bussotti G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C. Bussotti G, et al. Among authors: wilm a. Nucleic Acids Res. 2011 Sep 1;39(16):6886-95. doi: 10.1093/nar/gkr335. Epub 2011 May 30. Nucleic Acids Res. 2011. PMID: 21624887 Free PMC article.
49 results