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Folding kinetics of large RNAs.
Geis M, Flamm C, Wolfinger MT, Tanzer A, Hofacker IL, Middendorf M, Mandl C, Stadler PF, Thurner C. Geis M, et al. Among authors: wolfinger mt. J Mol Biol. 2008 May 23;379(1):160-73. doi: 10.1016/j.jmb.2008.02.064. Epub 2008 Mar 6. J Mol Biol. 2008. PMID: 18440024
BarMap: RNA folding on dynamic energy landscapes.
Hofacker IL, Flamm C, Heine C, Wolfinger MT, Scheuermann G, Stadler PF. Hofacker IL, et al. Among authors: wolfinger mt. RNA. 2010 Jul;16(7):1308-16. doi: 10.1261/rna.2093310. Epub 2010 May 26. RNA. 2010. PMID: 20504954 Free PMC article.
TSSAR: TSS annotation regime for dRNA-seq data.
Amman F, Wolfinger MT, Lorenz R, Hofacker IL, Stadler PF, Findeiß S. Amman F, et al. Among authors: wolfinger mt. BMC Bioinformatics. 2014 Mar 27;15:89. doi: 10.1186/1471-2105-15-89. BMC Bioinformatics. 2014. PMID: 24674136 Free PMC article.
Memory-efficient RNA energy landscape exploration.
Mann M, Kucharík M, Flamm C, Wolfinger MT. Mann M, et al. Among authors: wolfinger mt. Bioinformatics. 2014 Sep 15;30(18):2584-91. doi: 10.1093/bioinformatics/btu337. Epub 2014 May 14. Bioinformatics. 2014. PMID: 24833804 Free PMC article.
SHAPE directed RNA folding.
Lorenz R, Luntzer D, Hofacker IL, Stadler PF, Wolfinger MT. Lorenz R, et al. Among authors: wolfinger mt. Bioinformatics. 2016 Jan 1;32(1):145-7. doi: 10.1093/bioinformatics/btv523. Epub 2015 Sep 9. Bioinformatics. 2016. PMID: 26353838 Free PMC article.
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: wolfinger mt. Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Sci Rep. 2016. PMID: 27713552 Free PMC article.
Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: wolfinger mt. Sci Rep. 2017 Jan 11;7:39421. doi: 10.1038/srep39421. Sci Rep. 2017. PMID: 28074834 Free PMC article. No abstract available.
43 results