Ye Z - Search Results

1

Optimal strategies for virtual screening of induced-fit and flexible target in the 2015 D3R Grand Challenge.

Ye Z, Baumgartner MP, Wingert BM, Camacho CJ. Ye Z, et al. J Comput Aided Mol Des. 2016 Sep;30(9):695-706. doi: 10.1007/s10822-016-9941-0. Epub 2016 Aug 29. J Comput Aided Mol Des. 2016. PMID: 27573981 Free PMC article.

2

Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase.

Ye Z, Needham PG, Estabrooks SK, Whitaker SK, Garcia BL, Misra S, Brodsky JL, Camacho CJ. Ye Z, et al. Sci Rep. 2017 May 11;7(1):1789. doi: 10.1038/s41598-017-01880-4. Sci Rep. 2017. PMID: 28496195 Free PMC article.

3

Predicting protein targets for drug-like compounds using transcriptomics.

Pabon NA, Xia Y, Estabrooks SK, Ye Z, Herbrand AK, Süß E, Biondi RM, Assimon VA, Gestwicki JE, Brodsky JL, Camacho CJ, Bar-Joseph Z. Pabon NA, et al. Among authors: ye z. PLoS Comput Biol. 2018 Dec 7;14(12):e1006651. doi: 10.1371/journal.pcbi.1006651. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30532261 Free PMC article.

4

Defining the Kv2.1-syntaxin molecular interaction identifies a first-in-class small molecule neuroprotectant.

Yeh CY, Ye Z, Moutal A, Gaur S, Henton AM, Kouvaros S, Saloman JL, Hartnett-Scott KA, Tzounopoulos T, Khanna R, Aizenman E, Camacho CJ. Yeh CY, et al. Among authors: ye z. Proc Natl Acad Sci U S A. 2019 Jul 30;116(31):15696-15705. doi: 10.1073/pnas.1903401116. Epub 2019 Jul 15. Proc Natl Acad Sci U S A. 2019. PMID: 31308225 Free PMC article.

5

A specific inhibitor of ALDH1A3 regulates retinoic acid biosynthesis in glioma stem cells.

Li J, Garavaglia S, Ye Z, Moretti A, Belyaeva OV, Beiser A, Ibrahim M, Wilk A, McClellan S, Klyuyeva AV, Goggans KR, Kedishvili NY, Salter EA, Wierzbicki A, Migaud ME, Mullett SJ, Yates NA, Camacho CJ, Rizzi M, Sobol RW. Li J, et al. Among authors: ye z. Commun Biol. 2021 Dec 21;4(1):1420. doi: 10.1038/s42003-021-02949-7. Commun Biol. 2021. PMID: 34934174 Free PMC article.

6

SPLDExtraTrees: robust machine learning approach for predicting kinase inhibitor resistance.

Yang ZY, Ye ZF, Xiao YJ, Hsieh CY, Zhang SY. Yang ZY, et al. Brief Bioinform. 2022 May 13;23(3):bbac050. doi: 10.1093/bib/bbac050. Brief Bioinform. 2022. PMID: 35262669

7

ScaffComb: A Phenotype-Based Framework for Drug Combination Virtual Screening in Large-Scale Chemical Datasets.

Ye Z, Chen F, Zeng J, Gao J, Zhang MQ. Ye Z, et al. Adv Sci (Weinh). 2021 Dec;8(24):e2102092. doi: 10.1002/advs.202102092. Epub 2021 Nov 1. Adv Sci (Weinh). 2021. PMID: 34723439 Free PMC article.

8

Development of a 32-gene signature using machine learning for accurate prediction of inflammatory bowel disease.

Yu S, Zhang M, Ye Z, Wang Y, Wang X, Chen YG. Yu S, et al. Among authors: ye z. Cell Regen. 2023 Jan 5;12(1):8. doi: 10.1186/s13619-022-00143-6. Cell Regen. 2023. PMID: 36600111 Free PMC article.

9

Spin-Phonon Coupling in Iron-Doped Ultrathin Bismuth Halide Perovskite Derivatives.

Liu Y, Ai Q, Ye G, Ye Z, Hrubý J, Wang F, Orlando T, Wang Y, Luo J, Fang Q, Zhang B, Zhai T, Lin CY, Xu C, Zhu Y, Terlier T, Hill S, Zhu H, He R, Lou J. Liu Y, et al. Among authors: ye z. ACS Nano. 2024 May 3. doi: 10.1021/acsnano.4c03216. Online ahead of print. ACS Nano. 2024. PMID: 38700899

10

Inhibitory mechanisms of decoy receptor 3 in cecal ligation and puncture-induced sepsis.

Su J, Chen W, Zhou F, Li R, Tong Z, Wu S, Ye Z, Zhang Y, Lin B, Yu X, Guan B, Feng Z, Chen K, Chen Q, Chen L. Su J, et al. Among authors: ye z. mBio. 2024 May 3:e0052124. doi: 10.1128/mbio.00521-24. Online ahead of print. mBio. 2024. PMID: 38700314

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