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SOAP2: an improved ultrafast tool for short read alignment.
Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. Li R, et al. Among authors: yiu sm. Bioinformatics. 2009 Aug 1;25(15):1966-7. doi: 10.1093/bioinformatics/btp336. Epub 2009 Jun 3. Bioinformatics. 2009. PMID: 19497933
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.
Liu CM, Wong T, Wu E, Luo R, Yiu SM, Li Y, Wang B, Yu C, Chu X, Zhao K, Li R, Lam TW. Liu CM, et al. Among authors: yiu sm. Bioinformatics. 2012 Mar 15;28(6):878-9. doi: 10.1093/bioinformatics/bts061. Epub 2012 Jan 28. Bioinformatics. 2012. PMID: 22285832
Compressed indexing and local alignment of DNA.
Lam TW, Sung WK, Tam SL, Wong CK, Yiu SM. Lam TW, et al. Among authors: yiu sm. Bioinformatics. 2008 Mar 15;24(6):791-7. doi: 10.1093/bioinformatics/btn032. Epub 2008 Jan 28. Bioinformatics. 2008. PMID: 18227115
The sequence and de novo assembly of the giant panda genome.
Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, Li H, Jian M, Li J, Zhang Z, Nielsen R, Li D, Gu W, Yang Z, Xuan Z, Ryder OA, Leung FC, Zhou Y, Cao J, Sun X, Fu Y, Fang X, Guo X, Wang B, Hou R, Shen F, Mu B, Ni P, Lin R, Qian W, Wang G, Yu C, Nie W, Wang J, Wu Z, Liang H, Min J, Wu Q, Cheng S, Ruan J, Wang M, Shi Z, Wen M, Liu B, Ren X, Zheng H, Dong D, Cook K, Shan G, Zhang H, Kosiol C, Xie X, Lu Z, Zheng H, Li Y, Steiner CC, Lam TT, Lin S, Zhang Q, Li G, Tian J, Gong T, Liu H, Zhang D, Fang L, Ye C, Zhang J, Hu W, Xu A, Ren Y, Zhang G, Bruford MW, Li Q, Ma L, Guo Y, An N, Hu Y, Zheng Y, Shi Y, Li Z, Liu Q, Chen Y, Zhao J, Qu N, Zhao S, Tian F, Wang X, Wang H, Xu L, Liu X, Vinar T, Wang Y, Lam TW, Yiu SM, Liu S, Zhang H, Li D, Huang Y, Wang X, Yang G, Jiang Z, Wang J, Qin N, Li L, Li J, Bolund L, Kristiansen K, Wong GK, Olson M, Zhang X, Li S, Yang H, Wang J, Wang J. Li R, et al. Among authors: yiu sm. Nature. 2010 Jan 21;463(7279):311-7. doi: 10.1038/nature08696. Epub 2009 Dec 13. Nature. 2010. PMID: 20010809 Free PMC article.
RNASAlign: RNA structural alignment system.
Wong TK, Wan KL, Hsu BY, Cheung BW, Hon WK, Lam TW, Yiu SM. Wong TK, et al. Among authors: yiu sm. Bioinformatics. 2011 Aug 1;27(15):2151-2. doi: 10.1093/bioinformatics/btr338. Epub 2011 Jun 8. Bioinformatics. 2011. PMID: 21659321
186 results