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DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly.
Scheinin I, Sie D, Bengtsson H, van de Wiel MA, Olshen AB, van Thuijl HF, van Essen HF, Eijk PP, Rustenburg F, Meijer GA, Reijneveld JC, Wesseling P, Pinkel D, Albertson DG, Ylstra B. Scheinin I, et al. Among authors: ylstra b. Genome Res. 2014 Dec;24(12):2022-32. doi: 10.1101/gr.175141.114. Epub 2014 Sep 18. Genome Res. 2014. PMID: 25236618 Free PMC article.
Comprehensive genome sequence analysis of a breast cancer amplicon.
Collins C, Volik S, Kowbel D, Ginzinger D, Ylstra B, Cloutier T, Hawkins T, Predki P, Martin C, Wernick M, Kuo WL, Alberts A, Gray JW. Collins C, et al. Among authors: ylstra b. Genome Res. 2001 Jun;11(6):1034-42. doi: 10.1101/gr.gr1743r. Genome Res. 2001. PMID: 11381030 Free PMC article.
Assembly of microarrays for genome-wide measurement of DNA copy number.
Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG. Snijders AM, et al. Among authors: ylstra b. Nat Genet. 2001 Nov;29(3):263-4. doi: 10.1038/ng754. Nat Genet. 2001. PMID: 11687795
Microarray analysis reveals pivotal divergent mRNA expression profiles early in the development of either compensated ventricular hypertrophy or heart failure.
Buermans HP, Redout EM, Schiel AE, Musters RJ, Zuidwijk M, Eijk PP, van Hardeveld C, Kasanmoentalib S, Visser FC, Ylstra B, Simonides WS. Buermans HP, et al. Among authors: ylstra b. Physiol Genomics. 2005 May 11;21(3):314-23. doi: 10.1152/physiolgenomics.00185.2004. Epub 2005 Feb 22. Physiol Genomics. 2005. PMID: 15728335
249 results