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MultiVI: deep generative model for the integration of multimodal data.
Ashuach T, Gabitto MI, Koodli RV, Saldi GA, Jordan MI, Yosef N. Ashuach T, et al. Among authors: yosef n. Nat Methods. 2023 Aug;20(8):1222-1231. doi: 10.1038/s41592-023-01909-9. Epub 2023 Jun 29. Nat Methods. 2023. PMID: 37386189 Free PMC article.
Hepatitis C virus infects and perturbs liver stem cells.
Meyers NL, Ashuach T, Lyons DE, Khalid MM, Simoneau CR, Erickson AL, Bouhaddou M, Nguyen TT, Kumar GR, Taha TY, Natarajan V, Baron JL, Neff N, Zanini F, Mahmoudi T, Quake SR, Krogan NJ, Cooper S, McDevitt TC, Yosef N, Ott M. Meyers NL, et al. Among authors: yosef n. mBio. 2023 Nov 8;14(6):e0131823. doi: 10.1128/mbio.01318-23. Online ahead of print. mBio. 2023. PMID: 37938000 Free PMC article.
Time-resolved single-cell transcriptomics defines immune trajectories in glioblastoma.
Kirschenbaum D, Xie K, Ingelfinger F, Katzenelenbogen Y, Abadie K, Look T, Sheban F, Phan TS, Li B, Zwicky P, Yofe I, David E, Mazuz K, Hou J, Chen Y, Shaim H, Shanley M, Becker S, Qian J, Colonna M, Ginhoux F, Rezvani K, Theis FJ, Yosef N, Weiss T, Weiner A, Amit I. Kirschenbaum D, et al. Among authors: yosef n. Cell. 2024 Jan 4;187(1):149-165.e23. doi: 10.1016/j.cell.2023.11.032. Epub 2023 Dec 21. Cell. 2024. PMID: 38134933
The scverse project provides a computational ecosystem for single-cell omics data analysis.
Virshup I, Bredikhin D, Heumos L, Palla G, Sturm G, Gayoso A, Kats I, Koutrouli M; Scverse Community; Berger B, Pe'er D, Regev A, Teichmann SA, Finotello F, Wolf FA, Yosef N, Stegle O, Theis FJ. Virshup I, et al. Among authors: yosef n. Nat Biotechnol. 2023 May;41(5):604-606. doi: 10.1038/s41587-023-01733-8. Nat Biotechnol. 2023. PMID: 37037904 No abstract available.
193 results