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Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes.
Wang A, Chiou J, Poirion OB, Buchanan J, Valdez MJ, Verheyden JM, Hou X, Kudtarkar P, Narendra S, Newsome JM, Guo M, Faddah DA, Zhang K, Young RE, Barr J, Sajti E, Misra R, Huyck H, Rogers L, Poole C, Whitsett JA, Pryhuber G, Xu Y, Gaulton KJ, Preissl S, Sun X; NHLBI LungMap Consortium. Wang A, et al. Among authors: zhang k. Elife. 2020 Nov 9;9:e62522. doi: 10.7554/eLife.62522. Elife. 2020. PMID: 33164753 Free PMC article.
Comprehensive analysis of single cell ATAC-seq data with SnapATAC.
Fang R, Preissl S, Li Y, Hou X, Lucero J, Wang X, Motamedi A, Shiau AK, Zhou X, Xie F, Mukamel EA, Zhang K, Zhang Y, Behrens MM, Ecker JR, Ren B. Fang R, et al. Among authors: zhang k, zhang y. Nat Commun. 2021 Feb 26;12(1):1337. doi: 10.1038/s41467-021-21583-9. Nat Commun. 2021. PMID: 33637727 Free PMC article.
Cardiac cell type-specific gene regulatory programs and disease risk association.
Hocker JD, Poirion OB, Zhu F, Buchanan J, Zhang K, Chiou J, Wang TM, Zhang Q, Hou X, Li YE, Zhang Y, Farah EN, Wang A, McCulloch AD, Gaulton KJ, Ren B, Chi NC, Preissl S. Hocker JD, et al. Among authors: zhang q, zhang k, zhang y. Sci Adv. 2021 May 14;7(20):eabf1444. doi: 10.1126/sciadv.abf1444. Print 2021 May. Sci Adv. 2021. PMID: 33990324 Free PMC article.
Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.
Raviram R, Raman A, Preissl S, Ning J, Wu S, Koga T, Zhang K, Brennan CW, Zhu C, Luebeck J, Van Deynze K, Han JY, Hou X, Ye Z, Mischel AK, Li YE, Fang R, Baback T, Mugford J, Han CZ, Glass CK, Barr CL, Mischel PS, Bafna V, Escoubet L, Ren B, Chen CC. Raviram R, et al. Among authors: zhang k. Proc Natl Acad Sci U S A. 2023 May 16;120(20):e2210991120. doi: 10.1073/pnas.2210991120. Epub 2023 May 8. Proc Natl Acad Sci U S A. 2023. PMID: 37155843 Free PMC article.
Single-cell analysis of chromatin accessibility in the adult mouse brain.
Zu S, Li YE, Wang K, Armand EJ, Mamde S, Amaral ML, Wang Y, Chu A, Xie Y, Miller M, Xu J, Wang Z, Zhang K, Jia B, Hou X, Lin L, Yang Q, Lee S, Li B, Kuan S, Liu H, Zhou J, Pinto-Duarte A, Lucero J, Osteen J, Nunn M, Smith KA, Tasic B, Yao Z, Zeng H, Wang Z, Shang J, Behrens MM, Ecker JR, Wang A, Preissl S, Ren B. Zu S, et al. Among authors: zhang k. Nature. 2023 Dec;624(7991):378-389. doi: 10.1038/s41586-023-06824-9. Epub 2023 Dec 13. Nature. 2023. PMID: 38092917 Free PMC article.
Constructing 3D interaction maps from 1D epigenomes.
Zhu Y, Chen Z, Zhang K, Wang M, Medovoy D, Whitaker JW, Ding B, Li N, Zheng L, Wang W. Zhu Y, et al. Among authors: zhang k. Nat Commun. 2016 Mar 10;7:10812. doi: 10.1038/ncomms10812. Nat Commun. 2016. PMID: 26960733 Free PMC article.
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