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The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner.
Sleutels F, Soochit W, Bartkuhn M, Heath H, Dienstbach S, Bergmaier P, Franke V, Rosa-Garrido M, van de Nobelen S, Caesar L, van der Reijden M, Bryne JC, van Ijcken W, Grootegoed JA, Delgado MD, Lenhard B, Renkawitz R, Grosveld F, Galjart N. Sleutels F, et al. Epigenetics Chromatin. 2012 Jun 18;5(1):8. doi: 10.1186/1756-8935-5-8. Epigenetics Chromatin. 2012. PMID: 22709888 Free PMC article.
The microtubule plus-end tracking protein CLASP2 is required for hematopoiesis and hematopoietic stem cell maintenance.
Drabek K, Gutiérrez L, Vermeij M, Clapes T, Patel SR, Boisset JC, van Haren J, Pereira AL, Liu Z, Akinci U, Nikolic T, van Ijcken W, van den Hout M, Meinders M, Melo C, Sambade C, Drabek D, Hendriks RW, Philipsen S, Mommaas M, Grosveld F, Maiato H, Italiano JE Jr, Robin C, Galjart N. Drabek K, et al. Cell Rep. 2012 Oct 25;2(4):781-8. doi: 10.1016/j.celrep.2012.08.040. Epub 2012 Oct 19. Cell Rep. 2012. PMID: 23084744 Free article.
ACTG2 variants impair actin polymerization in sporadic Megacystis Microcolon Intestinal Hypoperistalsis Syndrome.
Halim D, Hofstra RM, Signorile L, Verdijk RM, van der Werf CS, Sribudiani Y, Brouwer RW, van IJcken WF, Dahl N, Verheij JB, Baumann C, Kerner J, van Bever Y, Galjart N, Wijnen RM, Tibboel D, Burns AJ, Muller F, Brooks AS, Alves MM. Halim D, et al. Among authors: van der werf cs, van ijcken wf, van bever y. Hum Mol Genet. 2016 Feb 1;25(3):571-83. doi: 10.1093/hmg/ddv497. Epub 2015 Dec 8. Hum Mol Genet. 2016. PMID: 26647307
CTCF chromatin residence time controls three-dimensional genome organization, gene expression and DNA methylation in pluripotent cells.
Soochit W, Sleutels F, Stik G, Bartkuhn M, Basu S, Hernandez SC, Merzouk S, Vidal E, Boers R, Boers J, van der Reijden M, Geverts B, van Cappellen WA, van den Hout M, Ozgur Z, van IJcken WFJ, Gribnau J, Renkawitz R, Graf T, Houtsmuller A, Grosveld F, Stadhouders R, Galjart N. Soochit W, et al. Nat Cell Biol. 2021 Aug;23(8):881-893. doi: 10.1038/s41556-021-00722-w. Epub 2021 Jul 29. Nat Cell Biol. 2021. PMID: 34326481
NARWHAL, a primary analysis pipeline for NGS data.
Brouwer RW, van den Hout MC, Grosveld FG, van Ijcken WF. Brouwer RW, et al. Among authors: van den hout mc, van ijcken wf. Bioinformatics. 2012 Jan 15;28(2):284-5. doi: 10.1093/bioinformatics/btr613. Epub 2011 Nov 8. Bioinformatics. 2012. PMID: 22072383
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.
Zuin J, Dixon JR, van der Reijden MI, Ye Z, Kolovos P, Brouwer RW, van de Corput MP, van de Werken HJ, Knoch TA, van IJcken WF, Grosveld FG, Ren B, Wendt KS. Zuin J, et al. Among authors: van de corput mp, van ijcken wf, van der reijden mi, van de werken hj. Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):996-1001. doi: 10.1073/pnas.1317788111. Epub 2013 Dec 13. Proc Natl Acad Sci U S A. 2014. PMID: 24335803 Free PMC article.
274 results