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The NIH Human Microbiome Project.
NIH HMP Working Group; Peterson J, Garges S, Giovanni M, McInnes P, Wang L, Schloss JA, Bonazzi V, McEwen JE, Wetterstrand KA, Deal C, Baker CC, Di Francesco V, Howcroft TK, Karp RW, Lunsford RD, Wellington CR, Belachew T, Wright M, Giblin C, David H, Mills M, Salomon R, Mullins C, Akolkar B, Begg L, Davis C, Grandison L, Humble M, Khalsa J, Little AR, Peavy H, Pontzer C, Portnoy M, Sayre MH, Starke-Reed P, Zakhari S, Read J, Watson B, Guyer M. NIH HMP Working Group, et al. Among authors: bonazzi v. Genome Res. 2009 Dec;19(12):2317-23. doi: 10.1101/gr.096651.109. Epub 2009 Oct 9. Genome Res. 2009. PMID: 19819907 Free PMC article.
A framework for human microbiome research.
Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.
The NIH Big Data to Knowledge (BD2K) initiative.
Bourne PE, Bonazzi V, Dunn M, Green ED, Guyer M, Komatsoulis G, Larkin J, Russell B. Bourne PE, et al. Among authors: bonazzi v. J Am Med Inform Assoc. 2015 Nov;22(6):1114. doi: 10.1093/jamia/ocv136. J Am Med Inform Assoc. 2015. PMID: 26555016 Free PMC article. No abstract available.
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO. Yilmaz P, et al. Among authors: bonazzi v. Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823. Nat Biotechnol. 2011. PMID: 21552244 Free PMC article.
Should biomedical research be like Airbnb?
Bonazzi VR, Bourne PE. Bonazzi VR, et al. PLoS Biol. 2017 Apr 7;15(4):e2001818. doi: 10.1371/journal.pbio.2001818. eCollection 2017 Apr. PLoS Biol. 2017. PMID: 28388615 Free PMC article.
Playing catch-up in building an open research commons.
Bourne PE, Bonazzi V, Brand A, Carroll B, Foster I, Guha RV, Hanisch R, Keller SA, Kennedy ML, Kirkpatrick C, Mons B, Nusser SM, Stebbins M, Strawn G, Szalay A. Bourne PE, et al. Among authors: bonazzi v. Science. 2022 Jul 15;377(6603):256-258. doi: 10.1126/science.abo5947. Epub 2022 Jul 14. Science. 2022. PMID: 35857616
FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources.
Clarke DJB, Wang L, Jones A, Wojciechowicz ML, Torre D, Jagodnik KM, Jenkins SL, McQuilton P, Flamholz Z, Silverstein MC, Schilder BM, Robasky K, Castillo C, Idaszak R, Ahalt SC, Williams J, Schurer S, Cooper DJ, de Miranda Azevedo R, Klenk JA, Haendel MA, Nedzel J, Avillach P, Shimoyama ME, Harris RM, Gamble M, Poten R, Charbonneau AL, Larkin J, Brown CT, Bonazzi VR, Dumontier MJ, Sansone SA, Ma'ayan A. Clarke DJB, et al. Cell Syst. 2019 Nov 27;9(5):417-421. doi: 10.1016/j.cels.2019.09.011. Epub 2019 Oct 30. Cell Syst. 2019. PMID: 31677972 Free PMC article.
The Celera Discovery System.
Kerlavage A, Bonazzi V, di Tommaso M, Lawrence C, Li P, Mayberry F, Mural R, Nodell M, Yandell M, Zhang J, Thomas P. Kerlavage A, et al. Among authors: bonazzi v. Nucleic Acids Res. 2002 Jan 1;30(1):129-36. doi: 10.1093/nar/30.1.129. Nucleic Acids Res. 2002. PMID: 11752274 Free PMC article.
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