van Ommen GJ - Search Results

1

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

't Hoen PA, Friedländer MR, Almlöf J, Sammeth M, Pulyakhina I, Anvar SY, Laros JF, Buermans HP, Karlberg O, Brännvall M; GEUVADIS Consortium; den Dunnen JT, van Ommen GJ, Gut IG, Guigó R, Estivill X, Syvänen AC, Dermitzakis ET, Lappalainen T. 't Hoen PA, et al. Among authors: van ommen gj. Nat Biotechnol. 2013 Nov;31(11):1015-22. doi: 10.1038/nbt.2702. Epub 2013 Sep 15. Nat Biotechnol. 2013. PMID: 24037425

2

Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.

Hestand MS, Klingenhoff A, Scherf M, Ariyurek Y, Ramos Y, van Workum W, Suzuki M, Werner T, van Ommen GJ, den Dunnen JT, Harbers M, 't Hoen PA. Hestand MS, et al. Among authors: van workum w, van ommen gj. Nucleic Acids Res. 2010 Sep;38(16):e165. doi: 10.1093/nar/gkq602. Epub 2010 Jul 7. Nucleic Acids Res. 2010. PMID: 20615900 Free PMC article.

3

Large-scale gene expression analysis of human skeletal myoblast differentiation.

Sterrenburg E, Turk R, 't Hoen PA, van Deutekom JC, Boer JM, van Ommen GJ, den Dunnen JT. Sterrenburg E, et al. Among authors: van ommen gj, van deutekom jc. Neuromuscul Disord. 2004 Sep;14(8-9):507-18. doi: 10.1016/j.nmd.2004.03.008. Neuromuscul Disord. 2004. PMID: 15336692

4

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms.

't Hoen PA, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen RH, de Menezes RX, Boer JM, van Ommen GJ, den Dunnen JT. 't Hoen PA, et al. Among authors: van ommen gj. Nucleic Acids Res. 2008 Dec;36(21):e141. doi: 10.1093/nar/gkn705. Epub 2008 Oct 15. Nucleic Acids Res. 2008. PMID: 18927111 Free PMC article.

5

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.

Hestand MS, van Galen M, Villerius MP, van Ommen GJ, den Dunnen JT, 't Hoen PA. Hestand MS, et al. Among authors: van ommen gj, van galen m. BMC Bioinformatics. 2008 Nov 26;9:495. doi: 10.1186/1471-2105-9-495. BMC Bioinformatics. 2008. PMID: 19036135 Free PMC article.

6

Cost-effective HRMA pre-sequence typing of clone libraries; application to phage display selection.

Pepers BA, Schut MH, Vossen RH, van Ommen GJ, den Dunnen JT, van Roon-Mom WM. Pepers BA, et al. Among authors: van roon mom wm, van ommen gj. BMC Biotechnol. 2009 May 22;9:50. doi: 10.1186/1472-6750-9-50. BMC Biotechnol. 2009. PMID: 19463169 Free PMC article.

7

New insights in gene-derived therapy: the example of Duchenne muscular dystrophy.

Aartsma-Rus A, den Dunnen JT, van Ommen GJ. Aartsma-Rus A, et al. Among authors: van ommen gj. Ann N Y Acad Sci. 2010 Dec;1214:199-212. doi: 10.1111/j.1749-6632.2010.05836.x. Epub 2010 Dec 1. Ann N Y Acad Sci. 2010. PMID: 21121926 Review.

8

DeepSAGE reveals genetic variants associated with alternative polyadenylation and expression of coding and non-coding transcripts.

Zhernakova DV, de Klerk E, Westra HJ, Mastrokolias A, Amini S, Ariyurek Y, Jansen R, Penninx BW, Hottenga JJ, Willemsen G, de Geus EJ, Boomsma DI, Veldink JH, van den Berg LH, Wijmenga C, den Dunnen JT, van Ommen GJ, 't Hoen PA, Franke L. Zhernakova DV, et al. Among authors: van den berg lh, van ommen gj. PLoS Genet. 2013 Jun;9(6):e1003594. doi: 10.1371/journal.pgen.1003594. Epub 2013 Jun 20. PLoS Genet. 2013. PMID: 23818875 Free PMC article.

9

Intensity-based analysis of two-colour microarrays enables efficient and flexible hybridization designs.

't Hoen PA, Turk R, Boer JM, Sterrenburg E, de Menezes RX, van Ommen GJ, den Dunnen JT. 't Hoen PA, et al. Among authors: van ommen gj. Nucleic Acids Res. 2004 Feb 24;32(4):e41. doi: 10.1093/nar/gnh038. Nucleic Acids Res. 2004. PMID: 14982960 Free PMC article.

10

Interspecies translation of disease networks increases robustness and predictive accuracy.

Anvar SY, Tucker A, Vinciotti V, Venema A, van Ommen GJ, van der Maarel SM, Raz V, 't Hoen PA. Anvar SY, et al. Among authors: van der maarel sm, van ommen gj. PLoS Comput Biol. 2011 Nov;7(11):e1002258. doi: 10.1371/journal.pcbi.1002258. Epub 2011 Nov 3. PLoS Comput Biol. 2011. PMID: 22072955 Free PMC article.

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