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Using Dali for structural comparison of proteins.
Holm L, Kääriäinen S, Wilton C, Plewczynski D. Holm L, et al. Among authors: plewczynski d. Curr Protoc Bioinformatics. 2006 Jul;Chapter 5:Unit 5.5. doi: 10.1002/0471250953.bi0505s14. Curr Protoc Bioinformatics. 2006. PMID: 18428766
Influence of colored noise on chaotic systems.
Redaelli S, Plewczyński D, Macek WM. Redaelli S, et al. Among authors: plewczynski d. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep;66(3 Pt 2A):035202. doi: 10.1103/PhysRevE.66.035202. Epub 2002 Sep 24. Phys Rev E Stat Nonlin Soft Matter Phys. 2002. PMID: 12366173
Diffusion on curved, periodic surfaces.
Hołyst R, Plewczyński D, Aksimentiev A, Burdzy K. Hołyst R, et al. Among authors: plewczynski d. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Jul;60(1):302-7. doi: 10.1103/physreve.60.302. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999. PMID: 11969764
Multi-scale phase separation by explosive percolation with single-chromatin loop resolution.
Sengupta K, Denkiewicz M, Chiliński M, Szczepińska T, Mollah AF, Korsak S, D'Souza R, Ruan Y, Plewczynski D. Sengupta K, et al. Among authors: d souza r, plewczynski d. Comput Struct Biotechnol J. 2022 Jul 2;20:3591-3603. doi: 10.1016/j.csbj.2022.06.063. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35860407 Free PMC article.
FIREcaller: Detecting frequently interacting regions from Hi-C data.
Crowley C, Yang Y, Qiu Y, Hu B, Abnousi A, Lipiński J, Plewczyński D, Wu D, Won H, Ren B, Hu M, Li Y. Crowley C, et al. Among authors: plewczynski d. Comput Struct Biotechnol J. 2020 Dec 29;19:355-362. doi: 10.1016/j.csbj.2020.12.026. eCollection 2021. Comput Struct Biotechnol J. 2020. PMID: 33489005 Free PMC article.
From DNA human sequence to the chromatin higher order organisation and its biological meaning: Using biomolecular interaction networks to understand the influence of structural variation on spatial genome organisation and its functional effect.
Chiliński M, Sengupta K, Plewczynski D. Chiliński M, et al. Among authors: plewczynski d. Semin Cell Dev Biol. 2022 Jan;121:171-185. doi: 10.1016/j.semcdb.2021.08.007. Epub 2021 Aug 22. Semin Cell Dev Biol. 2022. PMID: 34429265 Free article. Review.
148 results