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A high-resolution protein architecture of the budding yeast genome.
Nature. 2021 Apr;592(7853):309-314. doi: 10.1038/s41586-021-03314-8. Epub 2021 Mar 10.
Nature. 2021.
PMID: 33692541
Free PMC article.
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
Lai WKM, Mariani L, Rothschild G, Smith ER, Venters BJ, Blanda TR, Kuntala PK, Bocklund K, Mairose J, Dweikat SN, Mistretta K, Rossi MJ, James D, Anderson JT, Phanor SK, Zhang W, Zhao Z, Shah AP, Novitzky K, McAnarney E, Keogh MC, Shilatifard A, Basu U, Bulyk ML, Pugh BF.
Lai WKM, et al. Among authors: kuntala pk.
Genome Res. 2021 Sep;31(9):1663-1679. doi: 10.1101/gr.275472.121. Epub 2021 Aug 23.
Genome Res. 2021.
PMID: 34426512
Free PMC article.
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ChExMix: A Method for Identifying and Classifying Protein-DNA Interaction Subtypes.
Yamada N, Kuntala PK, Pugh BF, Mahony S.
Yamada N, et al. Among authors: kuntala pk.
J Comput Biol. 2020 Mar;27(3):429-435. doi: 10.1089/cmb.2019.0466. Epub 2020 Feb 5.
J Comput Biol. 2020.
PMID: 32023130
Free PMC article.
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STENCIL: A web templating engine for visualizing and sharing life science datasets.
Sun Q, Nematbakhsh A, Kuntala PK, Kellogg G, Pugh BF, Lai WKM.
Sun Q, et al. Among authors: kuntala pk.
PLoS Comput Biol. 2022 Feb 9;18(2):e1009859. doi: 10.1371/journal.pcbi.1009859. eCollection 2022 Feb.
PLoS Comput Biol. 2022.
PMID: 35139076
Free PMC article.
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PEGR: a flexible management platform for reproducible epigenomic and genomic research.
Shao D, Kellogg GD, Nematbakhsh A, Kuntala PK, Mahony S, Pugh BF, Lai WKM.
Shao D, et al. Among authors: kuntala pk.
Genome Biol. 2022 Apr 19;23(1):99. doi: 10.1186/s13059-022-02671-5.
Genome Biol. 2022.
PMID: 35440038
Free PMC article.
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Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser.
Zhuo X, Hsu S, Purushotham D, Kuntala PK, Harrison JK, Du AY, Chen S, Li D, Wang T.
Zhuo X, et al. Among authors: kuntala pk.
Genome Res. 2023 May;33(5):824-835. doi: 10.1101/gr.277550.122. Epub 2023 May 8.
Genome Res. 2023.
PMID: 37156621
Free PMC article.
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