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A statistical model for describing and simulating microbial community profiles.
Ma S, Ren B, Mallick H, Moon YS, Schwager E, Maharjan S, Tickle TL, Lu Y, Carmody RN, Franzosa EA, Janson L, Huttenhower C. Ma S, et al. PLoS Comput Biol. 2021 Sep 13;17(9):e1008913. doi: 10.1371/journal.pcbi.1008913. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34516542 Free PMC article.
Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.
Sinha R, Abu-Ali G, Vogtmann E, Fodor AA, Ren B, Amir A, Schwager E, Crabtree J, Ma S; Microbiome Quality Control Project Consortium; Abnet CC, Knight R, White O, Huttenhower C. Sinha R, et al. Among authors: ma s. Nat Biotechnol. 2017 Nov;35(11):1077-1086. doi: 10.1038/nbt.3981. Epub 2017 Oct 2. Nat Biotechnol. 2017. PMID: 28967885 Free PMC article.
Bone Marrow Is a Major Parasite Reservoir in Plasmodium vivax Infection.
Obaldia N 3rd, Meibalan E, Sa JM, Ma S, Clark MA, Mejia P, Moraes Barros RR, Otero W, Ferreira MU, Mitchell JR, Milner DA, Huttenhower C, Wirth DF, Duraisingh MT, Wellems TE, Marti M. Obaldia N 3rd, et al. Among authors: ma s. mBio. 2018 May 8;9(3):e00625-18. doi: 10.1128/mBio.00625-18. mBio. 2018. PMID: 29739900 Free PMC article.
Plasmodium gametocytes display homing and vascular transmigration in the host bone marrow.
De Niz M, Meibalan E, Mejia P, Ma S, Brancucci NMB, Agop-Nersesian C, Mandt R, Ngotho P, Hughes KR, Waters AP, Huttenhower C, Mitchell JR, Martinelli R, Frischknecht F, Seydel KB, Taylor T, Milner D, Heussler VT, Marti M. De Niz M, et al. Among authors: ma s. Sci Adv. 2018 May 23;4(5):eaat3775. doi: 10.1126/sciadv.aat3775. eCollection 2018 May. Sci Adv. 2018. PMID: 29806032 Free PMC article.
Continuity of transcriptomes among colorectal cancer subtypes based on meta-analysis.
Ma S, Ogino S, Parsana P, Nishihara R, Qian Z, Shen J, Mima K, Masugi Y, Cao Y, Nowak JA, Shima K, Hoshida Y, Giovannucci EL, Gala MK, Chan AT, Fuchs CS, Parmigiani G, Huttenhower C, Waldron L. Ma S, et al. Genome Biol. 2018 Sep 25;19(1):142. doi: 10.1186/s13059-018-1511-4. Genome Biol. 2018. PMID: 30253799 Free PMC article.
A framework for microbiome science in public health.
Wilkinson JE, Franzosa EA, Everett C, Li C; HCMPH researchers and trainees; HCMPH investigators; Hu FB, Wirth DF, Song M, Chan AT, Rimm E, Garrett WS, Huttenhower C. Wilkinson JE, et al. Nat Med. 2021 May;27(5):766-774. doi: 10.1038/s41591-021-01258-0. Epub 2021 Apr 5. Nat Med. 2021. PMID: 33820996 Review.
Multivariable association discovery in population-scale meta-omics studies.
Mallick H, Rahnavard A, McIver LJ, Ma S, Zhang Y, Nguyen LH, Tickle TL, Weingart G, Ren B, Schwager EH, Chatterjee S, Thompson KN, Wilkinson JE, Subramanian A, Lu Y, Waldron L, Paulson JN, Franzosa EA, Bravo HC, Huttenhower C. Mallick H, et al. Among authors: ma s. PLoS Comput Biol. 2021 Nov 16;17(11):e1009442. doi: 10.1371/journal.pcbi.1009442. eCollection 2021 Nov. PLoS Comput Biol. 2021. PMID: 34784344 Free PMC article.
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