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Page 1
Interactions among 17 respiratory pathogens: a cross-sectional study using clinical and community surveillance data.
Burstein R, Althouse BM, Adler A, Akullian A, Brandstetter E, Cho S, Emanuels A, Fay K, Gamboa L, Han P, Huden K, Ilcisin M, Izzo M, Jackson ML, Kim AE, Kimball L, Lacombe K, Lee J, Logue JK, Rogers J, Chung E, Sibley TR, Van Raay K, Wenger E, Wolf CR, Boeckh M, Chu H, Duchin J, Rieder M, Shendure J, Starita LM, Viboud C, Bedford T, Englund JA, Famulare M. Burstein R, et al. Among authors: viboud c. medRxiv [Preprint]. 2022 Feb 6:2022.02.04.22270474. doi: 10.1101/2022.02.04.22270474. medRxiv. 2022. PMID: 35169816 Free PMC article. Preprint.
SARS-CoV-2 incidence, transmission and reinfection in a rural and an urban setting: results of the PHIRST-C cohort study, South Africa, 2020-2021.
Cohen C, Kleynhans J, von Gottberg A, McMorrow ML, Wolter N, Bhiman JN, Moyes J, du Plessis M, Carrim M, Buys A, Martinson NA, Kahn K, Tollman S, Lebina L, Wafawanaka F, du Toit J, Xavier Gómez-Olivé F, Dawood FS, Mkhencele T, Sun K, Viboud C; PHIRST group; Tempia S. Cohen C, et al. Among authors: viboud c. medRxiv [Preprint]. 2021 Dec 4:2021.07.20.21260855. doi: 10.1101/2021.07.20.21260855. medRxiv. 2021. Update in: Lancet Infect Dis. 2022 Jun;22(6):821-834. doi: 10.1016/S1473-3099(22)00069-X. PMID: 34909794 Free PMC article. Updated. Preprint.
The impact of COVID-19 non-pharmaceutical interventions on future respiratory syncytial virus transmission in South Africa.
Bents S, Viboud C, Grenfell B, Hogan A, Tempia S, von Gottberg A, Moyes J, Walaza S, Cohen C, Baker R. Bents S, et al. Among authors: viboud c. medRxiv [Preprint]. 2022 Mar 13:2022.03.12.22271872. doi: 10.1101/2022.03.12.22271872. medRxiv. 2022. Update in: Influenza Other Respir Viruses. 2023 Dec 10;17(12):e13229. doi: 10.1111/irv.13229. PMID: 35313577 Free PMC article. Updated. Preprint.
Assessing the feasibility of sustaining SARS-CoV-2 local containment in China in the era of highly transmissible variants.
Wang Y, Sun K, Feng Z, Yi L, Wu Y, Liu H, Wang Q, Ajelli M, Viboud C, Yu H. Wang Y, et al. Among authors: viboud c. medRxiv [Preprint]. 2022 Jun 6:2022.05.07.22274792. doi: 10.1101/2022.05.07.22274792. medRxiv. 2022. Update in: BMC Med. 2022 Nov 15;20(1):442. doi: 10.1186/s12916-022-02640-6. PMID: 35611330 Free PMC article. Updated. Preprint.
Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Mohamed Bakhash SA, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: viboud c. medRxiv [Preprint]. 2022 Dec 16:2022.12.15.22283536. doi: 10.1101/2022.12.15.22283536. medRxiv. 2022. Update in: PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. PMID: 36561171 Free PMC article. Updated. Preprint.
Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States.
Perofsky AC, Huddleston J, Hansen C, Barnes JR, Rowe T, Xu X, Kondor R, Wentworth DE, Lewis N, Whittaker L, Ermetal B, Harvey R, Galiano M, Daniels RS, McCauley JW, Fujisaki S, Nakamura K, Kishida N, Watanabe S, Hasegawa H, Sullivan SG, Barr IG, Subbarao K, Krammer F, Bedford T, Viboud C. Perofsky AC, et al. Among authors: viboud c. medRxiv [Preprint]. 2024 May 22:2023.10.02.23296453. doi: 10.1101/2023.10.02.23296453. medRxiv. 2024. PMID: 37873362 Free PMC article. Preprint.
Model-based evaluation of alternative reactive class closure strategies against COVID-19.
Liu QH, Zhang J, Peng C, Litvinova M, Huang S, Poletti P, Trentini F, Guzzetta G, Marziano V, Zhou T, Viboud C, Bento AI, Lv J, Vespignani A, Merler S, Yu H, Ajelli M. Liu QH, et al. Among authors: viboud c. medRxiv [Preprint]. 2021 Apr 23:2021.04.18.21255683. doi: 10.1101/2021.04.18.21255683. medRxiv. 2021. Update in: Nat Commun. 2022 Jan 14;13(1):322. doi: 10.1038/s41467-021-27939-5. PMID: 33907769 Free PMC article. Updated. Preprint.
Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: a multi-model study.
Borchering RK, Mullany LC, Howerton E, Chinazzi M, Smith CP, Qin M, Reich NG, Contamin L, Levander J, Kerr J, Espino J, Hochheiser H, Lovett K, Kinsey M, Tallaksen K, Wilson S, Shin L, Lemaitre JC, Hulse JD, Kaminsky J, Lee EC, Davis JT, Mu K, Xiong X, Piontti APY, Vespignani A, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Hurt B, Chen J, Mortveit H, Wilson A, Marathe M, Hoops S, Bhattacharya P, Machi D, Chen S, Paul R, Janies D, Thill JC, Galanti M, Yamana T, Pei S, Shaman J, Espana G, Cavany S, Moore S, Perkins A, Healy JM, Slayton RB, Johansson MA, Biggerstaff M, Shea K, Truelove SA, Runge MC, Viboud C, Lessler J. Borchering RK, et al. Among authors: viboud c. medRxiv [Preprint]. 2022 Mar 10:2022.03.08.22271905. doi: 10.1101/2022.03.08.22271905. medRxiv. 2022. Update in: Lancet Reg Health Am. 2023 Jan;17:100398. doi: 10.1016/j.lana.2022.100398. PMID: 35313593 Free PMC article. Updated. Preprint.
Rapidly shifting immunologic landscape and severity of SARS-CoV-2 in the Omicron era in South Africa.
Sun K, Tempia S, Kleynhans J, von Gottberg A, McMorrow ML, Wolter N, Bhiman JN, Moyes J, Carrim M, Martinson NA, Kahn K, Lebina L, du Toit JD, Mkhencele T, Viboud C, Cohen C; PHIRST group. Sun K, et al. Among authors: viboud c. medRxiv [Preprint]. 2022 Aug 22:2022.08.19.22278993. doi: 10.1101/2022.08.19.22278993. medRxiv. 2022. Update in: Nat Commun. 2023 Jan 16;14(1):246. doi: 10.1038/s41467-022-35652-0. PMID: 36032973 Free PMC article. Updated. Preprint.
Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub.
Howerton E, Contamin L, Mullany LC, Qin M, Reich NG, Bents S, Borchering RK, Jung SM, Loo SL, Smith CP, Levander J, Kerr J, Espino J, van Panhuis WG, Hochheiser H, Galanti M, Yamana T, Pei S, Shaman J, Rainwater-Lovett K, Kinsey M, Tallaksen K, Wilson S, Shin L, Lemaitre JC, Kaminsky J, Hulse JD, Lee EC, McKee C, Hill A, Karlen D, Chinazzi M, Davis JT, Mu K, Xiong X, Piontti APY, Vespignani A, Rosenstrom ET, Ivy JS, Mayorga ME, Swann JL, España G, Cavany S, Moore S, Perkins A, Hladish T, Pillai A, Toh KB, Longini I Jr, Chen S, Paul R, Janies D, Thill JC, Bouchnita A, Bi K, Lachmann M, Fox S, Meyers LA; UT COVID-19 Modeling Consortium; Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Hurt B, Chen J, Mortveit H, Wilson A, Marathe M, Hoops S, Bhattacharya P, Machi D, Cadwell BL, Healy JM, Slayton RB, Johansson MA, Biggerstaff M, Truelove S, Runge MC, Shea K, Viboud C, Lessler J. Howerton E, et al. Among authors: viboud c. medRxiv [Preprint]. 2023 Jul 3:2023.06.28.23291998. doi: 10.1101/2023.06.28.23291998. medRxiv. 2023. Update in: Nat Commun. 2023 Nov 20;14(1):7260. doi: 10.1038/s41467-023-42680-x. PMID: 37461674 Free PMC article. Updated. Preprint.
362 results