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Using multi-tissue transcriptome-wide association study to identify candidate susceptibility genes for respiratory infectious diseases.
Zhu X, Zou Y, Jia L, Ye X, Zou Y, Tu J, Li J, Yu R, Yang S, Huang P. Zhu X, et al. Front Genet. 2023 Mar 20;14:1164274. doi: 10.3389/fgene.2023.1164274. eCollection 2023. Front Genet. 2023. PMID: 37020999 Free PMC article.

Results: We identified 19 significant genes (ULK4, AC010132.11, SURF1, NIPAL2, TRAP1, TAF1C, AC000078.5, RP4-639F20.1, RMDN2, ATP1B3, SRSF12, RP11-477D19.2, TFB1M, XXyac-YX65C7_A.2, TAF1C, PCGF2, and BNIP1) associated with IAV at a Bonferroni-corrected threshold of p < 0.05; 1

…
Results: We identified 19 significant genes (ULK4, AC010132.11, SURF1, NIPAL2, TRAP1, TAF1C, AC000078.5, RP4-639F20.1, RMDN2, ATP1B3, SRSF12 …
The Gas6 gene rs8191974 and Ap3s2 gene rs2028299 are associated with type 2 diabetes in the northern Chinese Han population.
Kazakova EV, Zghuang T, Li T, Fang Q, Han J, Qiao H. Kazakova EV, et al. Acta Biochim Pol. 2017;64(2):227-231. doi: 10.18388/abp.2016_1299. Epub 2017 Apr 11. Acta Biochim Pol. 2017. PMID: 28399188 Free article.
Previous studies in other countries have shown that single nucleotide polymorphisms (SNPs) in the growth arrest-specific gene 6 (Gas6; rs8191974) and adapter-related protein complex 3 subunit sigma-2 (Ap3s2; rs2028299) were associated with an increasedrisk for type 2 diabe …
Previous studies in other countries have shown that single nucleotide polymorphisms (SNPs) in the growth arrest-specific gene 6 (Gas6; rs819 …
Genetic evidence for a causal relationship between type 2 diabetes and peripheral artery disease in both Europeans and East Asians.
Xiu X, Zhang H, Xue A, Cooper DN, Yan L, Yang Y, Yang Y, Zhao H. Xiu X, et al. BMC Med. 2022 Aug 31;20(1):300. doi: 10.1186/s12916-022-02476-0. BMC Med. 2022. PMID: 36042491 Free PMC article.
Gene-based analyses consistently identified one gene ANKFY1 and gene-gene interactions (e.g., STARD10 [European-specific] to AP3S2 [East Asian-specific]; KCNJ11 [European-specific] to KCNQ1 [East Asian-specific]) associated with the trans-ethnic genetic overlap between T2D …
Gene-based analyses consistently identified one gene ANKFY1 and gene-gene interactions (e.g., STARD10 [European-specific] to AP3S2 [E …
Risk Factors for Hepatocellular Carcinoma in Cirrhotic Patients with Chronic Hepatitis B.
Zhang YQ, Peng LJ, Cao YR, Zeng ZP, Wu YJ, Shi H, Cheng SY, Wang JY, Friedman SL, Sninsky JJ, Guo JS. Zhang YQ, et al. Genet Test Mol Biomarkers. 2016 Sep;20(9):535-43. doi: 10.1089/gtmb.2016.0062. Epub 2016 Jul 8. Genet Test Mol Biomarkers. 2016. PMID: 27391584
The SNPs associated with HCC risk in patients with cirrhosis and CHB were rs11536889 in TLR4 and rs2853744 in SPP1. Polymorphisms of TLR4 rs2149356, AP3S2 rs2290351, STXBP5L rs2169302, MLEC rs7976497, and SOCS3 rs4969168 were associated with HCC risk in specific stratified …
The SNPs associated with HCC risk in patients with cirrhosis and CHB were rs11536889 in TLR4 and rs2853744 in SPP1. Polymorphisms of TLR4 rs …
Identification of candidate genomic regions for egg yolk moisture content based on a genome-wide association study.
Zhang R, Yao F, Cheng X, Yang M, Ning Z. Zhang R, et al. BMC Genomics. 2023 Mar 14;24(1):110. doi: 10.1186/s12864-023-09221-8. BMC Genomics. 2023. PMID: 36918797 Free PMC article.
FGF9, PIAS1, FEM1B, NOX5, GLCE, VDAC1, IGFBP7, and THOC5 were involved in lipid formation and regulation; AP3S2, GNPDA1, HSPA4, AP1B1, CABP7, EEF1D, SYTL3, PPP2CA, SKP1, and UBE2B were involved in protein folding and hydrolysis; and CSF2, SOWAHA, GDF9, FSTL4, RAPGEF6, PAQR …
FGF9, PIAS1, FEM1B, NOX5, GLCE, VDAC1, IGFBP7, and THOC5 were involved in lipid formation and regulation; AP3S2, GNPDA1, HSPA4, AP1B1 …
Association of recently identified type 2 diabetes gene variants with Gestational Diabetes in Asian Indian population.
Kanthimathi S, Chidambaram M, Bodhini D, Liju S, Bhavatharini A, Uma R, Anjana RM, Mohan V, Radha V. Kanthimathi S, et al. Mol Genet Genomics. 2017 Jun;292(3):585-591. doi: 10.1007/s00438-017-1292-6. Epub 2017 Feb 11. Mol Genet Genomics. 2017. PMID: 28190082
The study groups comprised unrelated pregnant women with GDM (n = 518) and pregnant women with normal glucose tolerance (NGT) (n = 1220). A total of nine SNPs in or near nine loci, namely AP3S2 (rs2028299), BAZ1B (rs12056034), CDKN2A/B (rs7020996), GRB14 (rs3923113), HHEX …
The study groups comprised unrelated pregnant women with GDM (n = 518) and pregnant women with normal glucose tolerance (NGT) (n = 1220). A …
Genomewide linkage and peakwide association analyses of carotid plaque in Caribbean Hispanics.
Dong C, Beecham A, Slifer S, Wang L, Blanton SH, Wright CB, Rundek T, Sacco RL. Dong C, et al. Stroke. 2010 Dec;41(12):2750-6. doi: 10.1161/STROKEAHA.110.596981. Epub 2010 Oct 21. Stroke. 2010. PMID: 20966410 Free PMC article.
In the association analysis of the 4 linkage peaks, several single nucleotide polymorphisms in or near SOX6, FSD2, AP3S2, EFTUD1, and MYOD1 were associated with carotid plaque traits with a nominal P 0.0005 in the Northern Manhattan Study data set and with a P 0.01 in Nort …
In the association analysis of the 4 linkage peaks, several single nucleotide polymorphisms in or near SOX6, FSD2, AP3S2, EFTUD1, and …
A single nucleotide polymorphism within DUSP9 is associated with susceptibility to type 2 diabetes in a Japanese population.
Fukuda H, Imamura M, Tanaka Y, Iwata M, Hirose H, Kaku K, Maegawa H, Watada H, Tobe K, Kashiwagi A, Kawamori R, Maeda S. Fukuda H, et al. PLoS One. 2012;7(9):e46263. doi: 10.1371/journal.pone.0046263. Epub 2012 Sep 27. PLoS One. 2012. PMID: 23029454 Free PMC article.
METHODS: We genotyped 11,319 Japanese participants (8,318 with type 2 diabetes and 3,001 controls) for each of the 7 SNPs-rs5945326 near DUSP9, rs3923113 near GRB14, rs16861329 in ST6GAL1, rs1802295 in VPS26A, rs7178572 in HMG20A, rs2028299 near AP3S2, and rs4812829 in HNF …
METHODS: We genotyped 11,319 Japanese participants (8,318 with type 2 diabetes and 3,001 controls) for each of the 7 SNPs-rs5945326 near DUS …
Physical Interactions and Expression Quantitative Traits Loci Identify Regulatory Connections for Obesity and Type 2 Diabetes Associated SNPs.
Fadason T, Ekblad C, Ingram JR, Schierding WS, O'Sullivan JM. Fadason T, et al. Front Genet. 2017 Oct 13;8:150. doi: 10.3389/fgene.2017.00150. eCollection 2017. Front Genet. 2017. PMID: 29081791 Free PMC article.
., expression quantitative trait loci (eQTL)] outcomes associated with these interactions. We identified 861 spatially regulated genes (e.g., AP3S2, ELP5, SVIP, IRS1, FADS2, WFS1, RBM6, HORMAD1, PYROXD2), which are enriched in tissues (e.g., adipose, skeletal muscle, pancr …
., expression quantitative trait loci (eQTL)] outcomes associated with these interactions. We identified 861 spatially regulated genes (e.g. …
Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.
Kooner JS, Saleheen D, Sim X, Sehmi J, Zhang W, Frossard P, Been LF, Chia KS, Dimas AS, Hassanali N, Jafar T, Jowett JB, Li X, Radha V, Rees SD, Takeuchi F, Young R, Aung T, Basit A, Chidambaram M, Das D, Grundberg E, Hedman AK, Hydrie ZI, Islam M, Khor CC, Kowlessur S, Kristensen MM, Liju S, Lim WY, Matthews DR, Liu J, Morris AP, Nica AC, Pinidiyapathirage JM, Prokopenko I, Rasheed A, Samuel M, Shah N, Shera AS, Small KS, Suo C, Wickremasinghe AR, Wong TY, Yang M, Zhang F; DIAGRAM; MuTHER; Abecasis GR, Barnett AH, Caulfield M, Deloukas P, Frayling TM, Froguel P, Kato N, Katulanda P, Kelly MA, Liang J, Mohan V, Sanghera DK, Scott J, Seielstad M, Zimmet PZ, Elliott P, Teo YY, McCarthy MI, Danesh J, Tai ES, Chambers JC. Kooner JS, et al. Nat Genet. 2011 Aug 28;43(10):984-9. doi: 10.1038/ng.921. Nat Genet. 2011. PMID: 21874001 Free PMC article.
In the combined analysis, we identified common genetic variants at six loci (GRB14, ST6GAL1, VPS26A, HMG20A, AP3S2 and HNF4A) newly associated with T2D (P = 4.1 10(-8) to P = 1.9 10(-11)). ...
In the combined analysis, we identified common genetic variants at six loci (GRB14, ST6GAL1, VPS26A, HMG20A, AP3S2 and HNF4A) newly a …
14 results