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Year Number of Results
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Page 1
The SIB Swiss Institute of Bioinformatics Semantic Web of data.
SIB Swiss Institute of Bioinformatics RDF Group Members. SIB Swiss Institute of Bioinformatics RDF Group Members. Nucleic Acids Res. 2024 Jan 5;52(D1):D44-D51. doi: 10.1093/nar/gkad902. Nucleic Acids Res. 2024. PMID: 37878411 Free PMC article.
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
Coudert E, Gehant S, de Castro E, Pozzato M, Baratin D, Neto T, Sigrist CJA, Redaschi N, Bridge A; UniProt Consortium. Coudert E, et al. Among authors: gehant s. Bioinformatics. 2023 Jan 1;39(1):btac793. doi: 10.1093/bioinformatics/btac793. Bioinformatics. 2023. PMID: 36484697 Free PMC article.
Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB.
Feuermann M, Boutet E, Morgat A, Axelsen KB, Bansal P, Bolleman J, de Castro E, Coudert E, Gasteiger E, Géhant S, Lieberherr D, Lombardot T, Neto TB, Pedruzzi I, Poux S, Pozzato M, Redaschi N, Bridge A, On Behalf Of The UniProt Consortium. Feuermann M, et al. Among authors: gehant s. Metabolites. 2021 Jan 12;11(1):48. doi: 10.3390/metabo11010048. Metabolites. 2021. PMID: 33445429 Free PMC article.
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
MacDougall A, Volynkin V, Saidi R, Poggioli D, Zellner H, Hatton-Ellis E, Joshi V, O'Donovan C, Orchard S, Auchincloss AH, Baratin D, Bolleman J, Coudert E, de Castro E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Arighi C, Wang Q, Chen C, Huang H, Garavelli J, Vinayaka CR, Yeh LS, Natale DA, Laiho K, Martin MJ, Renaux A, Pichler K; UniProt Consortium. MacDougall A, et al. Bioinformatics. 2020 Nov 1;36(17):4643-4648. doi: 10.1093/bioinformatics/btaa485. Bioinformatics. 2020. PMID: 32399560 Free PMC article.
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes.
Bolleman J, de Castro E, Baratin D, Gehant S, Cuche BA, Auchincloss AH, Coudert E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Xenarios I, Redaschi N, Bridge A. Bolleman J, et al. Among authors: gehant s. Gigascience. 2020 Feb 1;9(2):giaa003. doi: 10.1093/gigascience/giaa003. Gigascience. 2020. PMID: 32034905 Free PMC article.
Enzyme annotation in UniProtKB using Rhea.
Morgat A, Lombardot T, Coudert E, Axelsen K, Neto TB, Gehant S, Bansal P, Bolleman J, Gasteiger E, de Castro E, Baratin D, Pozzato M, Xenarios I, Poux S, Redaschi N, Bridge A; UniProt Consortium. Morgat A, et al. Among authors: gehant s. Bioinformatics. 2020 Mar 1;36(6):1896-1901. doi: 10.1093/bioinformatics/btz817. Bioinformatics. 2020. PMID: 31688925 Free PMC article.
FAIR adoption, assessment and challenges at UniProt.
Garcia L, Bolleman J, Gehant S, Redaschi N, Martin M; UniProt Consortium. Garcia L, et al. Among authors: gehant s. Sci Data. 2019 Sep 20;6(1):175. doi: 10.1038/s41597-019-0180-9. Sci Data. 2019. PMID: 31541106 Free PMC article.
22 results