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Page 1
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.
Rodino KG, Peaper DR, Kelly BJ, Bushman F, Marques A, Adhikari H, Tu ZJ, Marrero Rolon R, Westblade LF, Green DA, Berry GJ, Wu F, Annavajhala MK, Uhlemann AC, Parikh BA, McMillen T, Jani K, Babady NE, Hahn AM, Koch RT, Grubaugh ND; Yale SARS-CoV-2 Genomic Surveillance Initiative; Rhoads DD. Rodino KG, et al. Among authors: grubaugh nd. J Clin Microbiol. 2022 Jun 15;60(6):e0060022. doi: 10.1128/jcm.00600-22. Epub 2022 May 18. J Clin Microbiol. 2022. PMID: 35582905 Free PMC article.
Real-time public health communication of local SARS-CoV-2 genomic epidemiology.
Kalinich CC, Jensen CG, Neugebauer P, Petrone ME, Peña-Hernández M, Ott IM, Wyllie AL, Alpert T, Vogels CBF, Fauver JR, Grubaugh ND, Brito AF. Kalinich CC, et al. Among authors: grubaugh nd. PLoS Biol. 2020 Aug 21;18(8):e3000869. doi: 10.1371/journal.pbio.3000869. eCollection 2020 Aug. PLoS Biol. 2020. PMID: 32822393 Free PMC article.
Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States.
Alpert T, Brito AF, Lasek-Nesselquist E, Rothman J, Valesano AL, MacKay MJ, Petrone ME, Breban MI, Watkins AE, Vogels CBF, Kalinich CC, Dellicour S, Russell A, Kelly JP, Shudt M, Plitnick J, Schneider E, Fitzsimmons WJ, Khullar G, Metti J, Dudley JT, Nash M, Beaubier N, Wang J, Liu C, Hui P, Muyombwe A, Downing R, Razeq J, Bart SM, Grills A, Morrison SM, Murphy S, Neal C, Laszlo E, Rennert H, Cushing M, Westblade L, Velu P, Craney A, Cong L, Peaper DR, Landry ML, Cook PW, Fauver JR, Mason CE, Lauring AS, St George K, MacCannell DR, Grubaugh ND. Alpert T, et al. Among authors: grubaugh nd. Cell. 2021 May 13;184(10):2595-2604.e13. doi: 10.1016/j.cell.2021.03.061. Epub 2021 Apr 3. Cell. 2021. PMID: 33891875 Free PMC article.
Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity.
Lucas C, Vogels CBF, Yildirim I, Rothman JE, Lu P, Monteiro V, Gehlhausen JR, Campbell M, Silva J, Tabachnikova A, Peña-Hernandez MA, Muenker MC, Breban MI, Fauver JR, Mohanty S, Huang J; Yale SARS-CoV-2 Genomic Surveillance Initiative; Shaw AC, Ko AI, Omer SB, Grubaugh ND, Iwasaki A. Lucas C, et al. Among authors: grubaugh nd. Nature. 2021 Dec;600(7889):523-529. doi: 10.1038/s41586-021-04085-y. Epub 2021 Oct 11. Nature. 2021. PMID: 34634791 Free PMC article.
An outbreak of SARS-CoV-2 on a transplant unit in the early vaccination era.
Roberts SC, Foppiano Palacios C, Grubaugh ND, Alpert T, Ott IM, Breban MI; Yale SARS-CoV-2 Genomic Surveillance Initiative; Martinello RA, Smith C, Davis MW, Mcmanus D, Tirmizi S, Topal JE, Azar MM, Malinis M. Roberts SC, et al. Among authors: grubaugh nd. Transpl Infect Dis. 2022 Apr;24(2):e13782. doi: 10.1111/tid.13782. Epub 2022 Jan 25. Transpl Infect Dis. 2022. PMID: 34969164
Assessment of Clinical Effectiveness of BNT162b2 COVID-19 Vaccine in US Adolescents.
Oliveira CR, Niccolai LM, Sheikha H, Elmansy L, Kalinich CC, Grubaugh ND, Shapiro ED; Yale SARS-CoV-2 Genomic Surveillance Initiative. Oliveira CR, et al. Among authors: grubaugh nd. JAMA Netw Open. 2022 Mar 1;5(3):e220935. doi: 10.1001/jamanetworkopen.2022.0935. JAMA Netw Open. 2022. PMID: 35238933 Free PMC article.
Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons.
Chaguza C, Coppi A, Earnest R, Ferguson D, Kerantzas N, Warner F, Young HP, Breban MI, Billig K, Koch RT, Pham K, Kalinich CC, Ott IM, Fauver JR, Hahn AM, Tikhonova IR, Castaldi C, De Kumar B, Pettker CM, Warren JL, Weinberger DM, Landry ML, Peaper DR, Schulz W, Vogels CBF, Grubaugh ND. Chaguza C, et al. Among authors: grubaugh nd. Med. 2022 May 13;3(5):325-334.e4. doi: 10.1016/j.medj.2022.03.010. Epub 2022 Apr 6. Med. 2022. PMID: 35399324 Free PMC article.
Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.
Earnest R, Uddin R, Matluk N, Renzette N, Turbett SE, Siddle KJ, Loreth C, Adams G, Tomkins-Tinch CH, Petrone ME, Rothman JE, Breban MI, Koch RT, Billig K, Fauver JR, Vogels CBF, Bilguvar K, De Kumar B, Landry ML, Peaper DR, Kelly K, Omerza G, Grieser H, Meak S, Martha J, Dewey HB, Kales S, Berenzy D, Carpenter-Azevedo K, King E, Huard RC, Novitsky V, Howison M, Darpolor J, Manne A, Kantor R, Smole SC, Brown CM, Fink T, Lang AS, Gallagher GR, Pitzer VE, Sabeti PC, Gabriel S, MacInnis BL; New England Variant Investigation Team; Tewhey R, Adams MD, Park DJ, Lemieux JE, Grubaugh ND. Earnest R, et al. Among authors: grubaugh nd. Cell Rep Med. 2022 Mar 11;3(4):100583. doi: 10.1016/j.xcrm.2022.100583. eCollection 2022 Apr 19. Cell Rep Med. 2022. PMID: 35480627 Free PMC article.
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota.
Petrone ME, Rothman JE, Breban MI, Ott IM, Russell A, Lasek-Nesselquist E, Badr H, Kelly K, Omerza G, Renzette N, Watkins AE, Kalinich CC, Alpert T, Brito AF, Earnest R, Tikhonova IR, Castaldi C, Kelly JP, Shudt M, Plitnick J, Schneider E, Murphy S, Neal C, Laszlo E, Altajar A, Pearson C, Muyombwe A, Downing R, Razeq J, Niccolai L, Wilson MS, Anderson ML, Wang J, Liu C, Hui P, Mane S, Taylor BP, Hanage WP, Landry ML, Peaper DR, Bilguvar K, Fauver JR, Vogels CBF, Gardner LM, Pitzer VE, St George K, Adams MD, Grubaugh ND. Petrone ME, et al. Among authors: grubaugh nd. Commun Biol. 2022 May 11;5(1):439. doi: 10.1038/s42003-022-03347-3. Commun Biol. 2022. PMID: 35545661 Free PMC article.
177 results