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The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC, Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J, Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN. Motamayor JC, et al. Among authors: jenkins j. Genome Biol. 2013 Jun 3;14(6):r53. doi: 10.1186/gb-2013-14-6-r53. Genome Biol. 2013. PMID: 23731509 Free PMC article.
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.
Chapman JA, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Sehgal S, Oliker L, Schmutz J, Yelick KA, Scholz U, Waugh R, Poland JA, Muehlbauer GJ, Stein N, Rokhsar DS. Chapman JA, et al. Among authors: jenkins j. Genome Biol. 2015 Jan 31;16(1):26. doi: 10.1186/s13059-015-0582-8. Genome Biol. 2015. PMID: 25637298 Free PMC article.
A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis.
Mitros T, Lyons JB, Session AM, Jenkins J, Shu S, Kwon T, Lane M, Ng C, Grammer TC, Khokha MK, Grimwood J, Schmutz J, Harland RM, Rokhsar DS. Mitros T, et al. Among authors: jenkins j. Dev Biol. 2019 Aug 1;452(1):8-20. doi: 10.1016/j.ydbio.2019.03.015. Epub 2019 Apr 10. Dev Biol. 2019. PMID: 30980799 Free article.
A genome-wide survey of switchgrass genome structure and organization.
Sharma MK, Sharma R, Cao P, Jenkins J, Bartley LE, Qualls M, Grimwood J, Schmutz J, Rokhsar D, Ronald PC. Sharma MK, et al. Among authors: jenkins j. PLoS One. 2012;7(4):e33892. doi: 10.1371/journal.pone.0033892. Epub 2012 Apr 12. PLoS One. 2012. PMID: 22511929 Free PMC article.
Reference genome sequence of the model plant Setaria.
Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM. Bennetzen JL, et al. Among authors: jenkins j. Nat Biotechnol. 2012 May 13;30(6):555-61. doi: 10.1038/nbt.2196. Nat Biotechnol. 2012. PMID: 22580951
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J. Paterson AH, et al. Among authors: jenkins j. Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798. Nature. 2012. PMID: 23257886
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
International Peach Genome Initiative; Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P, Del Fabbro C, Aramini V, Copetti D, Gonzalez S, Horner DS, Falchi R, Lucas S, Mica E, Maldonado J, Lazzari B, Bielenberg D, Pirona R, Miculan M, Barakat A, Testolin R, Stella A, Tartarini S, Tonutti P, Arús P, Orellana A, Wells C, Main D, Vizzotto G, Silva H, Salamini F, Schmutz J, Morgante M, Rokhsar DS. International Peach Genome Initiative, et al. Among authors: jenkins j. Nat Genet. 2013 May;45(5):487-94. doi: 10.1038/ng.2586. Epub 2013 Mar 24. Nat Genet. 2013. PMID: 23525075 Free article.
2,749 results