Kiryu H - Search Results

1

Predictions of RNA secondary structure by combining homologous sequence information.

Hamada M, Sato K, Kiryu H, Mituyama T, Asai K. Hamada M, et al. Among authors: kiryu h. Bioinformatics. 2009 Jun 15;25(12):i330-8. doi: 10.1093/bioinformatics/btp228. Bioinformatics. 2009. PMID: 19478007 Free PMC article.

2

Identification of oxidative stress-related genes differentially expressed in Alzheimer's disease and construction of a hub gene-based diagnostic model.

Zhang Y, Kiryu H. Zhang Y, et al. Among authors: kiryu h. Sci Rep. 2023 Apr 26;13(1):6817. doi: 10.1038/s41598-023-34021-1. Sci Rep. 2023. PMID: 37100862 Free PMC article.

3

Regulation of lymphoid-myeloid lineage bias through regnase-1/3-mediated control of Nfkbiz.

Uehata T, Yamada S, Ori D, Vandenbon A, Giladi A, Jelinski A, Murakawa Y, Watanabe H, Takeuchi K, Toratani K, Mino T, Kiryu H, Standley DM, Tsujimura T, Ikawa T, Kondoh G, Landthaler M, Kawamoto H, Rodewald HR, Amit I, Yamamoto R, Miyazaki M, Takeuchi O. Uehata T, et al. Among authors: kiryu h. Blood. 2024 Jan 18;143(3):243-257. doi: 10.1182/blood.2023020903. Blood. 2024. PMID: 37922454 Free PMC article.

4

Extracting relations between promoter sequences and their strengths from microarray data.

Kiryu H, Oshima T, Asai K. Kiryu H, et al. Bioinformatics. 2005 Apr 1;21(7):1062-8. doi: 10.1093/bioinformatics/bti094. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15513998

5

Robust prediction of consensus secondary structures using averaged base pairing probability matrices.

Kiryu H, Kin T, Asai K. Kiryu H, et al. Bioinformatics. 2007 Feb 15;23(4):434-41. doi: 10.1093/bioinformatics/btl636. Epub 2006 Dec 20. Bioinformatics. 2007. PMID: 17182698

6

Murlet: a practical multiple alignment tool for structural RNA sequences.

Kiryu H, Tabei Y, Kin T, Asai K. Kiryu H, et al. Bioinformatics. 2007 Jul 1;23(13):1588-98. doi: 10.1093/bioinformatics/btm146. Epub 2007 Apr 25. Bioinformatics. 2007. PMID: 17459961

7

Rfold: an exact algorithm for computing local base pairing probabilities.

Kiryu H, Kin T, Asai K. Kiryu H, et al. Bioinformatics. 2008 Feb 1;24(3):367-73. doi: 10.1093/bioinformatics/btm591. Epub 2007 Dec 4. Bioinformatics. 2008. PMID: 18056736

8

A fast structural multiple alignment method for long RNA sequences.

Tabei Y, Kiryu H, Kin T, Asai K. Tabei Y, et al. Among authors: kiryu h. BMC Bioinformatics. 2008 Jan 23;9:33. doi: 10.1186/1471-2105-9-33. BMC Bioinformatics. 2008. PMID: 18215258 Free PMC article.

9

Software.ncrna.org: web servers for analyses of RNA sequences.

Asai K, Kiryu H, Hamada M, Tabei Y, Sato K, Matsui H, Sakakibara Y, Terai G, Mituyama T. Asai K, et al. Among authors: kiryu h. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W75-8. doi: 10.1093/nar/gkn222. Epub 2008 Apr 25. Nucleic Acids Res. 2008. PMID: 18440970 Free PMC article.

10

Prediction of RNA secondary structure using generalized centroid estimators.

Hamada M, Kiryu H, Sato K, Mituyama T, Asai K. Hamada M, et al. Among authors: kiryu h. Bioinformatics. 2009 Feb 15;25(4):465-73. doi: 10.1093/bioinformatics/btn601. Epub 2008 Dec 18. Bioinformatics. 2009. PMID: 19095700

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