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RS-FISH: precise, interactive, fast, and scalable FISH spot detection.
Bahry E, Breimann L, Zouinkhi M, Epstein L, Kolyvanov K, Mamrak N, King B, Long X, Harrington KIS, Lionnet T, Preibisch S. Bahry E, et al. Nat Methods. 2022 Dec;19(12):1563-1567. doi: 10.1038/s41592-022-01669-y. Epub 2022 Nov 17. Nat Methods. 2022. PMID: 36396787 Free PMC article.
Transcription Factor Dynamics.
Lu F, Lionnet T. Lu F, et al. Cold Spring Harb Perspect Biol. 2021 Nov 1;13(11):a040949. doi: 10.1101/cshperspect.a040949. Cold Spring Harb Perspect Biol. 2021. PMID: 34001530 Free PMC article. Review.
Three-dimensional chromatin landscapes in T cell acute lymphoblastic leukemia.
Kloetgen A, Thandapani P, Ntziachristos P, Ghebrechristos Y, Nomikou S, Lazaris C, Chen X, Hu H, Bakogianni S, Wang J, Fu Y, Boccalatte F, Zhong H, Paietta E, Trimarchi T, Zhu Y, Van Vlierberghe P, Inghirami GG, Lionnet T, Aifantis I, Tsirigos A. Kloetgen A, et al. Nat Genet. 2020 Apr;52(4):388-400. doi: 10.1038/s41588-020-0602-9. Epub 2020 Mar 23. Nat Genet. 2020. PMID: 32203470 Free PMC article.