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A generic motif discovery algorithm for sequential data.
Jensen KL, Styczynski MP, Rigoutsos I, Stephanopoulos GN. Jensen KL, et al. Among authors: rigoutsos i. Bioinformatics. 2006 Jan 1;22(1):21-8. doi: 10.1093/bioinformatics/bti745. Epub 2005 Oct 27. Bioinformatics. 2006. PMID: 16257985
BLOSUM62 miscalculations improve search performance.
Styczynski MP, Jensen KL, Rigoutsos I, Stephanopoulos G. Styczynski MP, et al. Among authors: rigoutsos i. Nat Biotechnol. 2008 Mar;26(3):274-5. doi: 10.1038/nbt0308-274. Nat Biotechnol. 2008. PMID: 18327232 No abstract available.
Evaluation of annotation strategies using an entire genome sequence.
Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P, Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J, Yagnik AT, Tramontano A, Devos D, Blaschke C, Valencia A, Brett D, Martin D, Leroy C, Rigoutsos I, Sander C, Ouzounis CA. Iliopoulos I, et al. Among authors: rigoutsos i. Bioinformatics. 2003 Apr 12;19(6):717-26. doi: 10.1093/bioinformatics/btg077. Bioinformatics. 2003. PMID: 12691983
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: rigoutsos i. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
129 results