van Hijum SA - Search Results

1

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?

Touw WG, Bayjanov JR, Overmars L, Backus L, Boekhorst J, Wels M, van Hijum SA. Touw WG, et al. Among authors: van hijum sa. Brief Bioinform. 2013 May;14(3):315-26. doi: 10.1093/bib/bbs034. Epub 2012 Jul 10. Brief Bioinform. 2013. PMID: 22786785 Free PMC article.

2

PanCGHweb: a web tool for genotype calling in pangenome CGH data.

Bayjanov JR, Siezen RJ, van Hijum SA. Bayjanov JR, et al. Among authors: van hijum sa. Bioinformatics. 2010 May 1;26(9):1256-7. doi: 10.1093/bioinformatics/btq103. Epub 2010 Mar 10. Bioinformatics. 2010. PMID: 20219865 Free PMC article.

3

PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains.

Bayjanov JR, Molenaar D, Tzeneva V, Siezen RJ, van Hijum SA. Bayjanov JR, et al. Among authors: van hijum sa. BMC Genomics. 2012 May 4;13:170. doi: 10.1186/1471-2164-13-170. BMC Genomics. 2012. PMID: 22559291 Free PMC article.

4

Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods.

Bayjanov JR, Starrenburg MJ, van der Sijde MR, Siezen RJ, van Hijum SA. Bayjanov JR, et al. Among authors: van der sijde mr, van hijum sa. BMC Microbiol. 2013 Mar 26;13:68. doi: 10.1186/1471-2180-13-68. BMC Microbiol. 2013. PMID: 23530958 Free PMC article.

5

Explaining microbial phenotypes on a genomic scale: GWAS for microbes.

Dutilh BE, Backus L, Edwards RA, Wels M, Bayjanov JR, van Hijum SA. Dutilh BE, et al. Among authors: van hijum sa. Brief Funct Genomics. 2013 Jul;12(4):366-80. doi: 10.1093/bfgp/elt008. Epub 2013 Apr 26. Brief Funct Genomics. 2013. PMID: 23625995 Free PMC article. Review.

6

Microbial bioinformatics for food safety and production.

Alkema W, Boekhorst J, Wels M, van Hijum SA. Alkema W, et al. Among authors: van hijum sa. Brief Bioinform. 2016 Mar;17(2):283-92. doi: 10.1093/bib/bbv034. Epub 2015 Jun 16. Brief Bioinform. 2016. PMID: 26082168 Free PMC article. Review.

7

Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction.

Ederveen TH, Overmars L, van Hijum SA. Ederveen TH, et al. Among authors: van hijum sa. PLoS One. 2013 May 10;8(5):e63523. doi: 10.1371/journal.pone.0063523. Print 2013. PLoS One. 2013. PMID: 23675487 Free PMC article.

8

CiVi: circular genome visualization with unique features to analyze sequence elements.

Overmars L, van Hijum SA, Siezen RJ, Francke C. Overmars L, et al. Among authors: van hijum sa. Bioinformatics. 2015 Sep 1;31(17):2867-9. doi: 10.1093/bioinformatics/btv249. Epub 2015 Apr 24. Bioinformatics. 2015. PMID: 25910699

9

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats.

Martino ME, Bayjanov JR, Caffrey BE, Wels M, Joncour P, Hughes S, Gillet B, Kleerebezem M, van Hijum SA, Leulier F. Martino ME, et al. Among authors: van hijum sa. Environ Microbiol. 2016 Dec;18(12):4974-4989. doi: 10.1111/1462-2920.13455. Epub 2016 Aug 4. Environ Microbiol. 2016. PMID: 27422487

10

Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains.

Wels M, Backus L, Boekhorst J, Dijkstra A, Beerthuyzen M, Siezen RJ, Bachmann H, van Hijum SA. Wels M, et al. Among authors: van hijum sa. Genome Announc. 2017 Mar 16;5(11):e01739-16. doi: 10.1128/genomeA.01739-16. Genome Announc. 2017. PMID: 28302789 Free PMC article.

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