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SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes.
Shen Y, Stracquadanio G, Wang Y, Yang K, Mitchell LA, Xue Y, Cai Y, Chen T, Dymond JS, Kang K, Gong J, Zeng X, Zhang Y, Li Y, Feng Q, Xu X, Wang J, Wang J, Yang H, Boeke JD, Bader JS. Shen Y, et al. Genome Res. 2016 Jan;26(1):36-49. doi: 10.1101/gr.193433.115. Epub 2015 Nov 13. Genome Res. 2016. PMID: 26566658 Free PMC article.
"Perfect" designer chromosome V and behavior of a ring derivative.
Xie ZX, Li BZ, Mitchell LA, Wu Y, Qi X, Jin Z, Jia B, Wang X, Zeng BX, Liu HM, Wu XL, Feng Q, Zhang WZ, Liu W, Ding MZ, Li X, Zhao GR, Qiao JJ, Cheng JS, Zhao M, Kuang Z, Wang X, Martin JA, Stracquadanio G, Yang K, Bai X, Zhao J, Hu ML, Lin QH, Zhang WQ, Shen MH, Chen S, Su W, Wang EX, Guo R, Zhai F, Guo XJ, Du HX, Zhu JQ, Song TQ, Dai JJ, Li FF, Jiang GZ, Han SL, Liu SY, Yu ZC, Yang XN, Chen K, Hu C, Li DS, Jia N, Liu Y, Wang LT, Wang S, Wei XT, Fu MQ, Qu LM, Xin SY, Liu T, Tian KR, Li XN, Zhang JH, Song LX, Liu JG, Lv JF, Xu H, Tao R, Wang Y, Zhang TT, Deng YX, Wang YR, Li T, Ye GX, Xu XR, Xia ZB, Zhang W, Yang SL, Liu YL, Ding WQ, Liu ZN, Zhu JQ, Liu NZ, Walker R, Luo Y, Wang Y, Shen Y, Yang H, Cai Y, Ma PS, Zhang CT, Bader JS, Boeke JD, Yuan YJ. Xie ZX, et al. Among authors: shen y, shen mh. Science. 2017 Mar 10;355(6329):eaaf4704. doi: 10.1126/science.aaf4704. Science. 2017. PMID: 28280151
Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome.
Shen Y, Wang Y, Chen T, Gao F, Gong J, Abramczyk D, Walker R, Zhao H, Chen S, Liu W, Luo Y, Müller CA, Paul-Dubois-Taine A, Alver B, Stracquadanio G, Mitchell LA, Luo Z, Fan Y, Zhou B, Wen B, Tan F, Wang Y, Zi J, Xie Z, Li B, Yang K, Richardson SM, Jiang H, French CE, Nieduszynski CA, Koszul R, Marston AL, Yuan Y, Wang J, Bader JS, Dai J, Boeke JD, Xu X, Cai Y, Yang H. Shen Y, et al. Science. 2017 Mar 10;355(6329):eaaf4791. doi: 10.1126/science.aaf4791. Science. 2017. PMID: 28280153 Free PMC article.
Genome Writing: Current Progress and Related Applications.
Wang Y, Shen Y, Gu Y, Zhu S, Yin Y. Wang Y, et al. Among authors: shen y. Genomics Proteomics Bioinformatics. 2018 Feb;16(1):10-16. doi: 10.1016/j.gpb.2018.02.001. Epub 2018 Feb 21. Genomics Proteomics Bioinformatics. 2018. PMID: 29474887 Free PMC article. Review.
Dynamic cell transition and immune response landscapes of axolotl limb regeneration revealed by single-cell analysis.
Li H, Wei X, Zhou L, Zhang W, Wang C, Guo Y, Li D, Chen J, Liu T, Zhang Y, Ma S, Wang C, Tan F, Xu J, Liu Y, Yuan Y, Chen L, Wang Q, Qu J, Shen Y, Liu S, Fan G, Liu L, Liu X, Hou Y, Liu GH, Gu Y, Xu X. Li H, et al. Among authors: shen y. Protein Cell. 2021 Jan;12(1):57-66. doi: 10.1007/s13238-020-00763-1. Protein Cell. 2021. PMID: 32748350 Free PMC article. No abstract available.
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